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Multishell #97

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Multishell #97

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Commits on Nov 11, 2020

  1. initial commit to new fork from old (?) brain-life repo. just comment… 

    … note, pre changes
    Brent McPherson committed Nov 11, 2020
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Commits on Nov 13, 2020

  1. added multishell support / partial implementation of kutosis forward … 

    …model
    Brent McPherson committed Nov 13, 2020
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  2. added / modified files for new virtual lesion test

    bcmcpher committed Nov 13, 2020
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Commits on Nov 14, 2020

  1. modified to look for modelKurtosis in fe and estimate the apparent ku… 

    …rtosis coefficient (akc); modifications for multishell data - bookmark, not for release
    bcmcpher committed Nov 14, 2020
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  2. changes for passing multishell / kurtosis parameters, fixed .gitignor… 

    …e for *.m~ files
    bcmcpher committed Nov 14, 2020
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  3. adjusted refs to shell so demeaning actully happens

    bcmcpher committed Nov 14, 2020
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Commits on Nov 16, 2020

  1. add current version of feBuildDictionary that will fit kurtosis model… 

    … to LiFE forward model
    bcmcpher committed Nov 16, 2020
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Commits on Nov 20, 2020

  1. build and write kurtosis dictionary in feBuildDictionaries, but use t… 

    …ensor model still - this is still locked on even when the kurtosis model isnt valid. Split one long print statement into 3 lines in feConnectomeEncoding. comments changed in feGet
    bcmcpher committed Nov 20, 2020
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Commits on Nov 30, 2020

  1. fix feGet(fe, dsigdemeaned) by transposing input to match what was ap… 

    …parently the original orientation of the data for linear indexing
    bcmcpher committed Nov 30, 2020
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Commits on Dec 2, 2020

  1. fixed the problem of transposed imaging data during call to get demea… 

    …ned data, updated comments to match / describe
    bcmcpher committed Dec 2, 2020
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  2. commented out all lines related to bvec flips and kurtosis fit. All t… 

    …he functions need to be updated to correctly parse inputs for these options - but that has to happen when the options work in the first place
    bcmcpher committed Dec 2, 2020
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Commits on Dec 11, 2020

  1. added feGet/feSet options for getting offset from input files, modifi… 

    …ed feConnectomeInit to pass warnings if a mismatch in file orientations is detected
    bcmcpher committed Dec 11, 2020
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Commits on Dec 13, 2020

  1. added flip correction as a fix if it detects one, streamlined storage… 

    … of offset / header info
    bcmcpher committed Dec 13, 2020
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Commits on Mar 11, 2021

  1. added checks to loading multishell info to fill in old single shell s… 

    …tructures
    bcmcpher committed Mar 11, 2021
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Commits on Mar 12, 2021

  1. add an isdeployed check around mex fxns so they can be compiled

    bcmcpher committed Mar 12, 2021
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Commits on Mar 29, 2021

  1. renamed fxn for sanity in debugging

    bcmcpher committed Mar 29, 2021
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Commits on Apr 2, 2021

  1. added function to convert 3d tensor to 2d matrix for optimization

    bcmcpher committed Apr 2, 2021
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  2. updated documentation

    bcmcpher committed Apr 2, 2021
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  3. preallocate and print useful updates in feSparseMatrixCoords

    Brent McPherson committed Apr 2, 2021
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