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Pretrain with scATAC data #175

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WhenMelancholy opened this issue Mar 30, 2024 · 1 comment
Open

Pretrain with scATAC data #175

WhenMelancholy opened this issue Mar 30, 2024 · 1 comment

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@WhenMelancholy
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Hello, it is mentioned in the paper that scGPT can utilize multi-omics data. May I ask if it is possible to use scATAC data for pre-training? Or how can such related data be used for fine-tuning downstream tasks?

@fscdc
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fscdc commented May 31, 2024

Hello, it is mentioned in the paper that scGPT can utilize multi-omics data. May I ask if it is possible to use scATAC data for pre-training? Or how can such related data be used for fine-tuning downstream tasks?

I face related problem, I want to pre-train a new foundation model with my own datasets using scGPT model architecture, but I do not know the method

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