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@borenstein-lab

borenstein-lab

Popular repositories

  1. microbiome-metabolome-curated-data microbiome-metabolome-curated-data Public

    HTML 40 20

  2. burrito burrito Public

    A visualization tool for exploratory data analysis of metagenomic data

    JavaScript 35 9

  3. fishtaco fishtaco Public

    FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of microbiome functional shifts

    Python 23 4

  4. MIMOSA MIMOSA Public

    Model-based Integration of Metabolite Observations and Species Abundances

    R 22 9

  5. MUSiCC MUSiCC Public

    MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome

    Python 14 5

  6. CoMiDA CoMiDA Public

    The code and distributable for designing minimal microbial communities with specified metabolic functions.

    C++ 11 3

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