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37 Open 70 Closed
37 Open 70 Closed
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Issues list

Allow XPath references to model objects, not just attributes
#144 opened Jun 29, 2023 by luciansmith
Capturer clashes with Pycharm due to rebinding of io.FileIO based sys.stdout and sys.stderr streams bug Something isn't working discussion enhancement New feature or request future
#143 opened Jun 26, 2023 by CodeByDrescher
@CodeByDrescher
Warn about duplicate figure names (or fix)
#141 opened Jun 14, 2023 by luciansmith
1
dependency on capturer
#135 opened May 3, 2023 by fbergmann
3
2
Subdirectories in OMEX files not working
#131 opened Apr 3, 2023 by luciansmith
Use tolerances even when changing simulation algorithm.
#130 opened Apr 3, 2023 by luciansmith
Fix failing XPP validation tests
#127 opened Mar 29, 2023 by luciansmith
Incorrect validation error for tasks that reference models.
#124 opened Dec 8, 2022 by luciansmith
infix math doesn't follow Python conventions
#120 opened Oct 18, 2022 by luciansmith
6 of 11 tasks
1
Biosimulators_utils is incompatible with numpy>=1.23.0
#115 opened Sep 1, 2022 by CodeByDrescher
1
@jonrkarr @CodeByDrescher
Round-tripping created OMEX files gives a warning
#114 opened Aug 2, 2022 by luciansmith
Raise Issue with CellML team regarding incorrect schema
#110 opened Apr 12, 2022 by bilalshaikh42
3
Encode additional features of XPP ODE files into SED-ML future Modeling format
#101 opened Feb 18, 2022 by jonrkarr
Convert data models to subclasses of dataclass enhancement New feature or request future
#79 opened Dec 8, 2021 by jonrkarr
Where possible return unit information with get_parameters_variables_outputs_for_simulation enhancement New feature or request Modeling format
#69 opened Oct 10, 2021 by jonrkarr
5 tasks
3
Support additional actions of BNGL format Modeling format
#64 opened Sep 22, 2021 by jonrkarr
Add validation rules for SED-ML L1V4 SED-ML
#59 opened Aug 9, 2021 by jonrkarr
5 of 7 tasks
Improve support for ZGINML format enhancement New feature or request Modeling format
#56 opened Jul 9, 2021 by jonrkarr
3 tasks
Update BioNetGen requirement when installation fixed Modeling format
#55 opened Jul 7, 2021 by jonrkarr
Use new Smoldyn features that will be added to 2.67 enhancement New feature or request Modeling format
#53 opened Jun 23, 2021 by jonrkarr
2 tasks
Parse algorithm parameters from Smoldyn files enhancement New feature or request Modeling format
#52 opened Jun 19, 2021 by jonrkarr
2 tasks
Parse time course from actions in BNGL files enhancement New feature or request Modeling format
#51 opened Jun 19, 2021 by jonrkarr
2 tasks done
@jonrkarr
1
Switch LEMS validation to use new pyNeuroML method Modeling format
#50 opened Jun 19, 2021 by jonrkarr
Add method of executing simulations with Singularity images enhancement New feature or request
#49 opened Jun 18, 2021 by jonrkarr
2 tasks
Make smoldyn requirement >= 2.67 once released Modeling format
#47 opened Jun 9, 2021 by jonrkarr
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