Skip to content

BioJava 6.1.0
Compare
Choose a tag to compare
@josemduarte josemduarte released this 27 Oct 04:42
· 146 commits to master since this release
biojava-6.1.0
2792cd7

Added

  • GenBankWriterHelper - method that uses the original locus line rather than creating a new one, preventing loss of information
  • GenBankReader - the ability to successfully parse GenBank files with a LOCUS ID containing white space
  • GenBankReader - the ability to successfully parse GenBank files missing a LOCUS ID
  • Aromaticity calculation in biojava-aa-prop module

Fixed

  • GenBankWriter - String Formatter error when key or value of Qualifier has character "%", #886
  • GenBankWriter - outputting db_xref feature qualifiers
  • GenBankWriter - outputting the accession version and GI ID
  • GenBankWriter - outputting feature locations containing joins and partial locations
  • GenBankReader - reading locations split over multiple lines
  • GenBankReader - set if feature qualifier values require quotes
  • Local alignment with linear gap penalty was producing an NPE, #1036
  • New default server for PDB files. Note that from Aug 2023 older versions of BioJava will not be able to fetch PDB files unless PDB.FILE.SERVER system property is used to override the default server
  • Dependency upgrades
  • Some bug and security fixes
Assets 2