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BioJava 4.2.2
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@andreasprlic andreasprlic released this 15 Jun 18:59
· 2362 commits to master since this release
biojava-4.2.2
a74758c

BioJava 4.2.2 is compatible with Java 7 and 8.

About

BioJava 4.2.2 has been released and is available using Maven from Maven Central as well as manual download (see below). This is purely a bug fix release correcting issues found since the 4.2.0 release.

This release contains over 31 commits from 5 contributors.

Bug fixes

This is a bug-fix release

  • CE-Symm features and bug fixes
    • Better data structures for symmetry axes (particularly for hierarchical symmetry)
    • Fix bug with symmetry axis positioning
    • Optimization includes all symmetry repeats for hierarchical symmetry
  • Update of protein modifications to latest version,
    • including new glycans and chromophores
    • Updating naming definitions to latest conventions

Maven Download

BioJava 4.2.2 requires Maven for the build process. All BioJava jar files are available via Maven Central as of this release.

You can create a BioJava dependency by adding the following XML to your project pom.xml file:

            <dependencies>
                    <dependency>
                            <groupId>org.biojava</groupId>
                            <artifactId>biojava-core</artifactId>
                            <version>4.2.2</version>
                    </dependency>
                    <!-- other biojava jars as needed -->
            </dependencies>

Manual Download

Module Binary Jar Source Jar Javadoc Jar
biojava-core biojava-core-4.2.2.jar biojava-core-4.2.2-sources.jar biojava-core-4.2.2-javadoc.jar
biojava-alignment biojava-alignment-4.2.2.jar biojava-alignment-4.2.2-sources.jar biojava-alignment-4.2.2-javadoc.jar
biojava-genome biojava-genome-4.2.2.jar biojava-genome-4.2.2-sources.jar biojava-genome-4.2.2-javadoc.jar
biojava-structure biojava-structure-4.2.2.jar biojava-structure-4.2.2-sources.jar biojava-structure-4.2.2-javadoc.jar
biojava-structure-gui biojava-structure-gui-4.2.2.jar biojava-structure-gui-4.2.2-sources.jar biojava-structure-gui-4.2.2-javadoc.jar
biojava-phylo biojava-phylo-4.2.2.jar biojava-phylo-4.2.2-sources.jar biojava-phylo-4.2.2-javadoc.jar
biojava-modfinder biojava-modfinder-4.2.2.jar biojava-modfinder-4.2.2-sources.jar biojava-modfinder-4.2.2-javadoc.jar
biojava-ws biojava-ws-4.2.2.jar biojava-ws-4.2.2-sources.jar biojava-ws-4.2.2-javadoc.jar
biojava-aa-prop biojava-aa-prop-4.2.2.jar biojava-aa-prop-4.2.2-sources.jar biojava-aa-prop-4.2.2-javadoc.jar
biojava-ontology biojava-ontology-4.2.2.jar biojava-ontology-4.2.2-sources.jar biojava-ontology-4.2.2-javadoc.jar
biojava-survival biojava-survival-4.2.2.jar biojava-survival-4.2.2-sources.jar biojava-survival-4.2.2-javadoc.jar
biojava-protein-disorder biojava-protein-disorder-4.2.2.jar biojava-protein-disorder-4.2.2-sources.jar biojava-protein-disorder-4.2.2-javadoc.jar
biojava-sequencing biojava-sequencing-4.2.2.jar biojava-sequencing-4.2.2-sources.jar biojava-sequencing-4.2.2-javadoc.jar

Release Date

BioJava 4.2.2 has been released on June 14th, 2016

Assets 2