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Add Linux aarch64 build for more Bioconductor packages #47789

Merged
merged 4 commits into from
May 10, 2024
Merged

Add Linux aarch64 build for more Bioconductor packages #47789

merged 4 commits into from
May 10, 2024

Commits on May 9, 2024

  1. iAdd Linux aarch64 build for more Bioconductor packages 

    - bamsignals
- bcrank
- bcseq
- beachmat
- chromdraw
- hdf5array
- rsamtools

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
    @martin-g
    martin-g committed May 9, 2024
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  2. Add linux-aarch64 build for bioconductor-rhdf5 too 

    Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
    @martin-g
    martin-g committed May 9, 2024
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  3. Add tapi as a dependency for bioconductor-beachmat 

    ```
(ERR) dyld[44564]: Library not loaded: '@rpath/libtapi.dylib'␛[0m
2024-05-09T12:56:36.5989360Z 12:56:34 ␛[32mBIOCONDA INFO␛[0m (ERR)   Referenced from: '/opt/mambaforge/envs/bioconda/pkgs/ld64_osx-64-609-h0fd476b_15/bin/x86_64-apple-darwin13.4.0-ld'␛[0m
2024-05-09T12:56:36.5991920Z 12:56:34 ␛[32mBIOCONDA INFO␛[0m (ERR)   Reason: tried: '/opt/mambaforge/envs/bioconda/pkgs/ld64_osx-64-609-h0fd476b_15/bin/../lib/libtapi.dylib' (no such file), '/opt/mambaforge/envs/bioconda/pkgs/ld64_osx-64-609-h0fd476b_15/bin/../lib/libtapi.dylib' (no such file), '/usr/local/lib/libtapi.dylib' (no such file), '/usr/lib/libtapi.dylib' (no such file)␛[0m
2024-05-09T12:56:36.5995710Z 12:56:34 ␛[32mBIOCONDA INFO␛[0m (ERR) clang-15: error: unable to execute command: Abort trap: 6␛[0m
```

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
    @martin-g
    martin-g committed May 9, 2024
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  4. Do not build bioc-bcseq and bioc-rsamtools for now. The build on OSX … 

    …fails

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
    @martin-g
    martin-g committed May 9, 2024
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