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Do not build bioc-bcseq and bioc-rsamtools for now. The build on OSX …
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…fails

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
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martin-g committed May 9, 2024
1 parent b792a21 commit b4bdb51
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9 changes: 2 additions & 7 deletions recipes/bioconductor-bcseq/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ source:
- 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
md5: e582b114bc4743a328b6ada2953a74da
build:
number: 1
number: 0
rpaths:
- lib/R/lib/
- lib/
Expand Down Expand Up @@ -41,13 +41,8 @@ test:
- '$R -e "library(''{{ name }}'')"'
about:
home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
license: 'GPL-3.0-or-later'
license: 'GPL (>= 2)'
summary: 'Fast Sequence Mapping in High-Throughput shRNA and CRISPR Screens'
description: 'This Rcpp-based package implements a highly efficient data structure and algorithm for performing alignment of short reads from CRISPR or shRNA screens to reference barcode library. Sequencing error are considered and matching qualities are evaluated based on Phred scores. A Bayes'' classifier is employed to predict the originating barcode of a read. The package supports provision of user-defined probability models for evaluating matching qualities. The package also supports multi-threading.'
license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'

extra:
additional-platforms:
- linux-aarch64
identifiers:
- biotools:{{ name|lower }}
4 changes: 1 addition & 3 deletions recipes/bioconductor-rsamtools/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ source:
- 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
md5: 63af2a7dd2513e992fd78b26ca2b3775
build:
number: 2
number: 1
rpaths:
- lib/R/lib/
- lib/
Expand Down Expand Up @@ -63,8 +63,6 @@ about:
description: 'This package provides an interface to the ''samtools'', ''bcftools'', and ''tabix'' utilities for manipulating SAM (Sequence Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.'
license_file: LICENSE
extra:
additional-platforms:
- linux-aarch64
identifiers:
- biotools:rsamtools
- doi:10.1038/nmeth.3252
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