Releases: bids-standard/bids-specification
Releases · bids-standard/bids-specification
v1.9.0
v1.9.0 (2023-11-20)
- [ENH] add
ElectricalStimulation
and\*Parameters
metadata to MEEG jsons #1638 (sappelhoff) - Fix years and degrees Units and unit to be singular to match the rest #1631 (yarikoptic)
- [FIX] Hierarchical Event Descriptors (HED) page update #1623 (effigies)
- FIX: Do not require notch frequencies to be parsed as numbers, accommodating multiples #1605 (effigies)
- [ENH] Allow Levels field of column descriptions to be objects with TermURLs for each level #1603 (Remi-Gau)
- [ENH] Add optional low_cutoff and high_cutoff columns for fnirs channels.tsv #1597 (Remi-Gau)
- Recommend SliceTiming if MRAcquisitionType is "2D" #1594 (tsalo)
- [ENH] Add Level objects to channels.json for motion #1591 (effigies)
- [ENH] Add "chunk" entity to MRI datatype #1586 (valosekj)
- [SCHEMA][ENH] Remove atlas entity and replace it with seg in prep of BEP038 #1579 (melanieganz)
- [FIX] improve longitudinal example #1576 (Remi-Gau)
- Adds Kim Ray as maintainer. #1571 (arokem)
- [ENH] Allow for "echo" entity to be used with T1w and other nonparametric anatomical suffixes #1570 (yarikoptic)
- Update
templates
in modality-agnostic-files #1564 (sappelhoff) - [FIX] Clarify that electrodes.tsv is optional for MEG, for use with simultaneous (i)EEG #1555 (effigies)
- [ENH] Allow UNKNOWN and NONE ContrastBolusIngredients #1547 (Remi-Gau)
- [FIX] Update links to BIDS examples #1545 (Remi-Gau)
- [ENH] add schema in appendix #1543 (Remi-Gau)
- [ENH] add "visual correction" and "head stabilization" metadata #1539 (Remi-Gau)
- [ENH] Clarify meaning of raw vs derivative datasets #1537 (CPernet)
- [FIX] match subject label in folder and filename in func example #1536 (Remi-Gau)
- FIX: Trail MEG directory formats with
/
#1534 (effigies) - [ENH] Permit CITATION.cff as structured alternative to some dataset_description fields #1525 (effigies)
- [FIX] Add missing column description in physio example #1514 (sappelhoff)
- [ENH] Clarify that data files must be uniquely identified by entities/suffix #1508 (sappelhoff)
- DOC: Auto-generate full API docs #1505 (effigies)
- [INFRA] Publish schema tools API docs to additional ReadTheDocs site #1491 (bendhouseart)
- [FIX] Remove references to unspecified aslcontext.json #1485 (Remi-Gau)
- [FIX] Revert index (entity format) definition to be a non-negative number, permitting zero #1482 (TheChymera)
- ENH: Add version list to schema.meta and a warning on unknown BIDSVersion #1472 (effigies)
- [FIX] Clean up qMRI RB1COR notes #1465 (lukeje)
- [ENH] Allow fractional seconds in StartTime #1459 (sappelhoff)
- [MISC] consistently list filename templates;
ext
-->extension
;\_photo.jpg
-->\_photo.\<extension\>
#1458 (sappelhoff) - [FIX] Demote
sample
andvalue
columns inevents.tsv
from OPTIONAL to arbitrary #1457 (sappelhoff) - ENH: Clarify shape of PDT2 images and recommend acq entity for split PDw/T2w images #1448 (effigies)
- [ENH] clarify guiding principles for requirement levels #1444 (sappelhoff)
- [FIX] Clarify that dataset_description.Genetics object is required for genetics data #1442 (sappelhoff)
- [ENH] Clarify that BIDS specification is in American English #1439 (yarikoptic)
- [MISC] Link to new BEP guidelines. #1426 (arokem)
- [FIX] reorganize anat filename templates #1419 (Remi-Gau)
- [FIX] Rename
channels.tsv
column:orientation\_component
tocomponent
#1417 (sjeung) - [ENH] Some missing docstrings for bidsschematools #1413 (anibalsolon)
- [FIX] fixing some minor issues introduced recently #1411 (yarikoptic)
- SCHEMA: Implement some fairly easy rules #1410 (effigies)
- [REF] refactor institution and task tables #1397 (Remi-Gau)
- [ENH] Add paragraph about richness versus distinctness in filenames #1392 (CPernet)
- [FIX] Updated HED score library version #1390 (VisLab)
- [FIX] Updated links and fixed typos in hed appendix #1383 (VisLab)
- [ENH] add screen parameters metadata #1369 (Remi-Gau)
- RF: allow for any "recording" file to be listed in _scans.tsv not just "neural recording" #1368 (yarikoptic)
- [FIX] wrong usage of DOI in SourceDatasets example #1361 (sappelhoff)
- [FIX] make references to Neuromag/Elekta/MEGIN consistent #1359 (sappelhoff)
- [DOC] link to steering group section on bids website #1358 (Remi-Gau)
- [ENH] Add reference for ASL BEP #1357 (Remi-Gau)
- [FIX] remove redundant entity definitions in behavioral page #1356 (Remi-Gau)
- [FIX] add missing processing entity...
v1.8.0
v1.8.0 (2022-10-29)
- [FIX] Drop the functional and f for NIRS #1325 (rob-luke)
- [FIX][SCHEMA] Add conditionals for PET ReconMethod* and ReconFilter #1299 (bendhouseart)
- [ENH] use schema to mention which "top directories" are allowed #1289 (Remi-Gau)
- [ENH] Add glossary links to all tables #1268 (tsalo)
- [ENH] Remove redundant entity definitions on MRI page #1265 (tsalo)
- [ENH] Standardize and organize entity descriptions #1264 (tsalo)
- [ENH] Add filename template legend #1259 (Remi-Gau)
- [MISC] Reorder appendices #1256 (tsalo)
- [MISC] Clarify: FieldMap PE technique --> no SPM #1253 (CPernet)
- [MISC] Adding qMRI BIDS article reference (BEP001) #1251 (agahkarakuzu)
- [ENH] Link to filename element definitions in filename templates #1228 (tsalo)
- [MISC] Remove label format and inheritance principle redundancies in fMRI section #1197 (Remi-Gau)
- [ENH] add task metadata to PET #1196 (Remi-Gau)
- [FIX] clarify which file to list in scans.tsv for file formats with multiple files #1178 (sappelhoff)
- [FIX] add recommendation to fully omit non-compulsory data that is n/a #1171 (sappelhoff)
- [FIX] Discourage use of "sample" in events if sampling frequency is ambiguous, add guidelines for precision #1140 (sappelhoff)
- [FIX] Clarify MEG empty-room recommendations #1125 (robertoostenveld)
- [FIX] clarify no blank and duplicated headers in TSV #1116 (sappelhoff)
- [ENH] Added the specification for using HED libraries in BIDS #1106 (VisLab)
- [ENH] Microscopy: NGFF format support #1104 (TheChymera)
- [ENH] Add Microscopy-BIDS citation #1102 (mariehbourget)
- [FIX] MEG link typo #1100 (xi)
- [FIX] IntendedFor in (i)EEG is dataset relative #1093 (sappelhoff)
- [MISC] make dataset_description.Authors RECOMMENDED #1092 (sappelhoff)
- [ENH] adding optional _rec-label to DWI #1090 (dorahermes)
- [ENH] State of the schema sprint #1075 (effigies)
- [MISC] Preface each macro call with comment #1052 (Remi-Gau)
- [ENH] allow for .png and .tif in eeg/ieeg/meg as allowed for micr #1049 (yarikoptic)
- [FIX] typo in "rawdata" example #1045 (sappelhoff)
- [MISC] consistently use "directory" instead of "folder" as a term #1044 (sappelhoff)
- [MISC] Update CODEOWNERS #1040 (erdalkaraca)
- [ENH] Allow README file extensions. #1033 (mateuszpawlik)
- [MISC] Rewrite and update html build instructions #1032 (sappelhoff)
- [FIX] Clarify that BIDS standard template data is to be in scanner coordinates (MEG, iEEG, EEG) #1031 (alexrockhill)
- [FIX] Add coordsystem-specific definition of DigitizedHeadPoints #1023 (tsalo)
- [FIX] PET Spec; added known DICOM tags, fixed tag error, updated citation, clarified scale factor. #1021 (bendhouseart)
- [MISC] clarify copyright for logo #1019 (sappelhoff)
- [FIX] Change recording entity to REQUIRED for pet/blood modality #1005 (ghisvail)
- [ENH] Microscopy: Add IntendedFor metadata field to photo files #1000 (mariehbourget)
- [ENH] Introduce the atlas entity for derivatives data #997 (sebastientourbier)
- [ENH] Clearly define "entity" in common principles #947 (Lestropie)
- [ENH] Add BIDS URIs and deprecate relative paths, RawSources and (possibly unused) BasedOn #918 (effigies)
- [ENH] BEP030: Functional Near-Infrared Spectroscopy #802 (rob-luke)
- [FIX] Clarify run entity to accommodate multiple imaging modalities #760 (yarikoptic)
v1.7.0
Changes
- BF: Use wikipedia for TIFF URL, adobe's page is 404ing now #1007 (yarikoptic)
- [FIX] update highlighting of examples, JSON keys and values, and TSV headers or values in the schema #998 (Remi-Gau)
- [SCHEMA, FIX] Remove mentions of auxdatatypes #996 (tsalo)
- [MISC] minor wording and consistency improvements for channels.tsv in EEG, MEG, iEEG #993 (sappelhoff)
- [FIX] typo: extra sentence in anat section #991 (Remi-Gau)
- [FIX] Optionally support echo entity for VFA suffix #989 (TheChymera)
- [FIX] update definition acq_time for sessions.tsv #986 (Remi-Gau)
- [FIX] add microscopy to modalities in schema #984 (Remi-Gau)
- [INFRA] Fix linkchecker #982 (sappelhoff)
- [DOC] update steering group composition #976 (Remi-Gau)
- customize footer on html spec #975 (sappelhoff)
- [FIX] Update HED appendix to comply with current HED version #970 (VisLab)
- ENH: Update B0Field metadata to accommodate single-blip fieldmaps #968 (effigies)
- [FIX] harmonize 'file name' into 'filename' #962 (yarikoptic)
- [FIX] Reword front page #958 (arokem)
- [MAINT] Update links to starter kit website #957 (effigies)
- [FIX] Entity table: Clarify meaning of empty cells #955 (Lestropie)
- [MISC] Add Eric Earl as a Maintainer #953 (ericearl)
- [FIX] Spelling errors in appendices #951 (Lestropie)
- [FIX] Broken hyperlink in entity list file #949 (Lestropie)
- [FIX] Rewrite inheritance principle #946 (Lestropie)
- [INFRA] fix "CircleCI redirector" GH-action: remove the 2nd (sanity) check #944 (yarikoptic)
- [FIX] Typo: ECG_headshape #942 (Moo-Marc)
- [FIX] description: dwi is specialized T2 weighting, not T2* #939 (sappelhoff)
- [FIX] relax unrealistically strict requirements with ieeg channels.tsv 'name' column #938 (sappelhoff)
- [INFRA] expand submenus on landing page automatically #937 (sappelhoff)
- [FIX] Add links from derivatives section to entity list #936 (sappelhoff)
- [FIX] Remove repeated words #934 (DimitriPapadopoulos)
- [INFRA/FIX] Use string concatenation in table macro #933 (effigies)
- [INFRA] Run linkchecker in stock docker image #932 (effigies)
- [INFRA] add (optional) pre-commit config file #929 (sappelhoff)
- [FIX] Clarify that EDF/BDF files MUST have lower case extensions in BIDS #927 (adam2392)
- [ENH] Generate glossary page from schema #923 (tsalo)
- [ENH] Render valid value restrictions in tables based on object definitions in schema #921 (tsalo)
- [ENH] add
hemi
entity to schema #917 (Remi-Gau) - [INFRA] PDF version of spec: fix handling of internal links #915 (sappelhoff)
- [ENH] update and reformat table for template in coordinate system page #903 (Remi-Gau)
- [ENH] add details for content of
\*\_beh.json
#902 (Remi-Gau) - [SCHEMA] Add MeasurementToolMetadata and Derivative metadata fields #899 (tsalo)
- [SCHEMA] Add new MEG files and fix entity tables #898 (tsalo)
- [FIX] small typo in json example #897 (Remi-Gau)
- [INFRA] tiny speedup of building PDF by moving
re.compile\(\)
outside of a loop #896 (DimitriPapadopoulos) - [INFRA] Document *.webm video files as binary #895 (DimitriPapadopoulos)
- [SCHEMA] add physio to schema or EEG, MEG, iEEG, PET, ASL, DWI #894 (Remi-Gau)
- [SCHEMA] Reorganize schema code into a package #892 (tsalo)
- [FIX] Clarify shifting dates RECOMMENDED, add example EDF #891 (sappelhoff)
- [INFRA] fix draft rendering css on mobile or when browser window is narrow #889 (sappelhoff)
- [MISC] Add an animated BIDS logo #886 (adswa)
- [SCHEMA] Consolidate schema files by term type #883 (tsalo)
- [ENH] BEP031: Microscopy #881 (mariehbourget)
- [INFRA] jQuery 3.4.1 → 3.6.0 #875 (DimitriPapadopoulos)
- [INFRA] Add "codespell" tool to CI checks to catch typos sooner #873 (DimitriPapadopoulos)
- [INFRA] Several style fixes (Flake8) for Python code in the repo #872 (DimitriPapadopoulos)
- [FIX] Make subheadings consistent in 06-longitudinal-and-multi-site-studies.md #870 (guiomar)
- [DOC] add Anthony as maintainer #868 (Remi-Gau)
- [MISC] add "forward slash" requirement for paths to common principles #867 (sappelhoff)
- [ENH] Add "ScanRAS" as an accepted coordinate frame for ieeg #866 (alexrockhill)
- [INFRA] Add .lgtm.yml file for better usage of LGTM CI tool #865 ([DimitriPapadopoulos](https:/...
v1.6.0
v1.6.0 (2021-04-22)
- [FIX] Typos discovered by codespell #784 (yarikoptic)
- [FIX] Rename "Unit" metadata to "Units" for consistency with existing fields #773 (effigies)
- [FIX] typo in pet: institution -> institutional #771 (sappelhoff)
- [INFRA] install git in linkchecker job #767 (sappelhoff)
- [INFRA] Fix CircleCI workflows #764 (sappelhoff)
- [INFRA] do not run remark on auto CHANGES #755 (sappelhoff)
- [FIX] Mix up (typo) between ficiduals and landmarks in EEG spec #754 (rob-luke)
- [INFRA] updating remark, CIs, contributor docs #745 (sappelhoff)
- [FIX] schema for i/eeg coordsys+elecs: sub-ses-acq-space are allowed entities #743 (sappelhoff)
- [DOC] move schema documentation into the schema folder #740 (Remi-Gau)
- [MISC] standardize string examples format in tables #739 (Remi-Gau)
- [MISC] Clarify participant_id in participants.tsv file if it exists #738 (adam2392)
- [FIX] split MEG files should be listed separately in scans.tsv #735 (eort)
- [FIX] 1) Clarify appropriate labels for space entity, 2) Clarify channels+electrodes do not have to match #734 (sappelhoff)
- [MISC] refactor stimuli mentioning sections in the events page #697 (Remi-Gau)
- [ENH] Bep 009: Positron Emission Tomography #633 (melanieganz)
v1.5.0
v1.5.0 (2021-02-23)
- [FIX] Updated TotalAcquiredVolumes into TotalAcquiredPairs #742 (effigies)
- [SCHEMA] Update qMRI fieldmap schema #728 (effigies)
- [FIX] Add deprecated anatomical MRI suffixes back into schema #725 (tsalo)
- [FIX] Correct schema irregularities for func datatype #724 (tsalo)
- [FIX] Make flip optional for MP2RAGE #722 (tsalo)
- [FIX] Correct entity names in YAML files #720 (tsalo)
- [ENH] Clarify run indexing information for MRI acquisitions #719 (effigies)
- [ENH] Harmonize CoordinateSystem details for MRI, MEG, EEG, iEEG #717 (sappelhoff)
- [SCHEMA] Update entity YAML keys #714 (effigies)
- [MISC] Added full names for some contributors in .mailmap file #705 (yarikoptic)
- [INFRA] Migrate md and yml checks from travis to GH actions #693 (sappelhoff)
- [INFRA] Move part entity to before recording entity #692 (tsalo)
- [ENH] BEP001 - qMRI maps and some additional metadata #690 (agahkarakuzu)
- [ENH] BEP001 - Entity-linked file collections #688 (effigies)
- [ENH] BEP001 - New entities: inv & mt #681 (agahkarakuzu)
- [DOC] add contributing guidelines to add figures in the specs #679 (Remi-Gau)
- [MISC] use RFC 2119 language in legend of the "volume timing" table #678 (Remi-Gau)
- [FIX] Add OPTIONAL acq entity to channels.tsv, events.tsv to match electrophysiological acquisitions #677 (sappelhoff)
- [MISC] Update all links to use HTTPS whenever possible. #676 (gllmflndn)
- [INFRA] Relax line length limit for linting YAML files #673 (effigies)
- [ENH] BEP001 - New entity: flip #672 (agahkarakuzu)
- [ENH] BEP001 - RepetitionTimeExcitation and RepetitionTimePreparation #671 (agahkarakuzu)
- [ENH] Bep 005: Arterial Spin Labeling #669 (sappelhoff)
- [FIX] Added white space after table #660 (robertoostenveld)
- [MISC] add remi as maintainer #657 (Remi-Gau)
- update Contributing with info on how to respond to reviews #655 (Remi-Gau)
- [FIX] add paragraph on MEG specific "markers" suffix in MEG spec #653 (sappelhoff)
- [FIX] Rewrite the MRI/fieldmaps subsection for consistency with the rest of specs #651 (oesteban)
- [FIX] Fixing template string on electrodes for eeg and ieeg. #650 (adam2392)
- ENH: Update genetics-BIDS citation #646 (effigies)
- [SCHEMA] Add derivatives entities to the schema #645 (tsalo)
- [MISC] add brief note that TSV example in the spec may currently use either tab or space characters #643 (yarikoptic)
- [ENH] Add "multipart DWI" acquisitions and refactor DWI specifications #624 (oesteban)
- [SCHEMA] Render schema elements in text #610 (tsalo)
- [ENH] Add part entity for complex-valued data #424 (tsalo)
v1.4.1
v1.4.1 (2020-10-13)
- [INFRA] minor robustness enhancements to pdf build shell script #642 (yarikoptic)
- [FIX] consistent CoordinateSystem fields for ephys #641 (sappelhoff)
- [INFRA] set up github action to detect latin phrases #636 (Remi-Gau)
- [ENH] Add a definition for "deprecation" #634 (sappelhoff)
- [MISC] consolidate BIDS citations in introduction #630 (sappelhoff)
- [FIX] URI "definition" and recommendation #629 (Remi-Gau)
- [FIX] change remaining latin expressions (etc and i.e.) #628 (Remi-Gau)
- [FIX] replace "e.g.," by "for example" #626 (Remi-Gau)
- [FIX] arrays of 3D coordinates MUST supply numeric values in x, y, z order #623 (sappelhoff)
- [FIX] Accidentally swapped Neuromag/Elekta/MEGIN cross-talk & fine-calibration filename extensions #621 (hoechenberger)
- [FIX] improve HED documentation #619 (VisLab)
- [INFRA] Move MRI section headings up a level #618 (tsalo)
- [INFRA] SCHEMA: Declare entities by concept names, add entity field for filename components #616 (effigies)
- [FIX] Change wrong text references from *CoordinateSystemUnits to *CoordinateUnits #614 (sappelhoff)
- [ENH] Describe arbitrary units in Common Principles #606 (tsalo)
- [FIX] Clarify data types and requirement levels for all JSON files #605 (sappelhoff)
- [INFRA] downgrade github-changelog-generator to 1.14.3 due to issue with 1.15.2 #600 (sappelhoff)
- [FIX] tighter rules for sharing MEG cross-talk and fine-calibration .fif files #598 (sappelhoff)
- [MISC] Add tsalo as a BIDS maintainer #597 (tsalo)
- [FIX] clarify definition of events in common principles #595 (sappelhoff)
- [INFRA] use --release-branch option in github-changelog-generator #594 (sappelhoff)
- [ENH] Define "modality" and clarify "data type" #592 (effigies)
- [FIX] Adjust index definition to be nonnegative integer #590 (nicholst)
- [MISC] fix links, make json object links consistent, fix pandoc rendering #587 (sappelhoff)
- [FIX] Fix link in Common principles #583 (tsalo)
- [ENH] Specify how to share cross-talk and fine-calibration for Neuromag/Elekta/MEGIN data #581 (sappelhoff)
- [ENH] Specify echo and run indices are nonnegative integers in schema #578 (tsalo)
- [ENH] add optional presentation software name, version, OS, and code to events.json #573 (Remi-Gau)
- [ENH] added PPG as an accepted channel type for EEG, MEG and iEEG #570 (robertoostenveld)
- [INFRA] Move entity definitions to a separate page #568 (tsalo)
- [INFRA] enable pandoc emojis for the pdf build #562 (sappelhoff)
- [INFRA] Auto adjust table fences before PDF conversion #560 (sebastientourbier)
- [ENH] Support run and acq entities in behavior-only data #556 (tsalo)
- [FIX] Clarify requirement levels for TSV metadata fields #555 (sappelhoff)
- [FIX] Reorganize rec, ce entities, _defacemask #550 (emdupre)
- [FIX] Clarify Upper-casing of Channels.tsv Channel Type #548 (adam2392)
- [ENH] Extend date time information to include optional UTC syntax, warn about FIF requirements #546 (sappelhoff)
- [FIX] clarify that \<physio|stim>.json is REQUIRED #542 (sappelhoff)
- [FIX] Replace all non-breaking spaces with vanilla spaces #536 (nicholst)
- [FIX] Clarify indices are nonnegative integers. #535 (nicholst)
- [FIX] Clarify use of session entity in file names #532 (Moo-Marc)
- [ENH] Add the ability of users to specify an explicit HED.xml schema for validation. #527 (VisLab)
- [FIX] clarify that scans.json is allowed and recommended #523 (sappelhoff)
- [INFRA] add copyright holder to license. #521 (sappelhoff)
- [FIX] clarify XXXCoord* in the coordinate systems appendix #520 (sappelhoff)
- [ENH] Update
beh/
specification to contrast with any neural recordings #515 (effigies) - [Fix] 'segmentation' spelling in 05-derivatives/03-imaging.md #514 (rwblair)
- [FIX] restructure and clarify *_physio/*_stim section #513 (sappelhoff)
- [FIX] clarify file formats in EEG, iEEG #511 (sappelhoff)
- [Fix] Add links and release dates to pre GH changelog, fix formatting #509 (sappelhoff)
- [FIX] Clarify that
acq\_time
inscans.json
refers to first data point acquired #506 (tsalo) - [INFRA] make circle artifact link a GH action, point to pdf #505 (sappelhoff)
- [FIX] Typos in DECISION-MAKING file #504 (tsalo)
- [ENH] Add
Commenting on a PR
to CONTRIBUTING.md #490 (franklin-feingold) - [FIX] clarify MEG empty-room recording naming conventions #480 (sappelhoff)
- [INFRA] Convert entity table to yaml [#475](https://github.com/bids-standard/bids...
v1.4.0
This release specifies common derivatives!
v1.4.0 (2020-06-11)
- [FIX] Clarify language on unsetting a key/value pair #495 (nicholst)
- ENH: Add RECOMMENDED DatasetType key to dataset description #494 (effigies)
- Clarify mask/dseg/probseg in common derivatives #489 (effigies)
- Reorganize derivatives #488 (effigies)
- Enh/prov #486 (satra)
- [ENH] optionally allow LICENSE file #483 (sappelhoff)
- [INFRA] linkchecker - ignore github pull and tree URLs #477 (yarikoptic)
- [ENH] Allow fractional seconds in scans file datetimes #470 (tsalo)
- [MISC] Maintainers -
Scope
responsibility #467 (franklin-feingold) - [FIX] Align tables in MRI section #465 (sappelhoff)
- [FIX] Drop
\_part-
reference from example, introduce\_split-
entity #460 (sappelhoff) - [FIX] clarify participants tsv+json with examples and recommendations #459 (sappelhoff)
- [FIX] Remove BESA from list of restricted keywords of EEG coordsystems #457 (sappelhoff)
- [INFRA] add steps for release protocol (PDF upload) #455 (sappelhoff)
- [FIX] Add reference to PDF on front page of specification #452 (nicholst)
- [INFRA] Add conditional for link-checking releases #451 (franklin-feingold)
- [FIX] unordered list formatting in BEP018 #449 (sappelhoff)
- [FIX] fix inconsistencies for task label between sections #446 (Remi-Gau)
- [FIX] update DECISION-MAKING.md document with new governance #441 (sappelhoff)
- [ENH] Add
res
andden
keywords to indicate resolution of resampled data #301 (oesteban) - [ENH] BEP 003: Common Derivatives #265 (effigies)
- [ENH] Add Glossary of terms/abbreviations used in the specification #152 (yarikoptic)
v1.3.0
Changes
- Added contributors from VisLab #444 (VisLab)
- FIX: Clarify snake_case+CamelCase in TSV+JSON #442 (sappelhoff)
- [FIX] Eliminate web/online-specific language #437 (nicholst)
- [INFRA] ensure build_docs_pdf CircleCI job runs last #436 (sappelhoff)
- [INFRA] Add issue templates for GitHub #434 (sappelhoff)
- [INFRA] Get latest PDF build from CircleCI artifacts #433 (sappelhoff)
- [INFRA] Update release protocol #432 (franklin-feingold)
- [INFRA] add support for building PDF versions of the spec #431 (Arshitha)
- [ENH] Explicitly mention bids-validator and update link #428 (sappelhoff)
- [INFRA] use new bids-maintenance GitHub account to take over automatic work #426 (sappelhoff)
- [FIX] Unify section titles and table-of-contents entries #422 (nicholst)
- [INFRA] add # before heading in CHANGES #419 (sappelhoff)
- [INFRA] fix heading of auto changelog to be a markdown header #417 (sappelhoff)
- ENH: Add OPTIONAL EthicsApprovals field to dataset description #412 (effigies)
- [ENH] BEP 018 - Genetic Information #395 (effigies)
v1.2.2
Changes
- BEP 18 suggestions #398 (effigies)
- [MISC] Add Sébastien Tourbier to contributors #394 (sebastientourbier)
- [MISC] moved list of extension proposals to the main BIDS website #389 (robertoostenveld)
- [FIX] Typos and clarifications #386 (apjanke)
- ENH: Add watermark to drafts #383 (effigies)
- [MISC] Teon Brooks retiring moderator duties for BEP021 #381 (teonbrooks)
- [FIX] clarify that string is expected for HowToAcknowledge field in dataset_description.json #380 (sappelhoff)
- [MISC] Typo and style #378 (TheChymera)
- [FIX] divide readme into 3 parts #374 (sappelhoff)
- FIX: Refer to BIDS consistently, instead of "\<Modality>-BIDS" #366 (sappelhoff)
- [FIX] Change recommended anonymization date from 1900 to 1925 #363 (alexrockhill)
- [FIX] Minor fixups of inconsistencies while going through a PDF version #362 (yarikoptic)
- specify further the pipeline following #345 #358 (CPernet)
- FIX: clarify that filters should be specified as object of objects #348 (sappelhoff)
- FIX: Clarify channels.tsv is RECOMMENDED consistently across ephys #347 (sappelhoff)
- [FIX] Typo fix (contract -> contrast) in events documentation #346 (snastase)
- RM: rm TOC.md - seems no longer pertinent/used #341 (yarikoptic)
- [MISC] Move the PR template to a separate folder and improve contents #338 (jhlegarreta)
- [INFRA] Find npm requirements file in Circle #336 (franklin-feingold)
- ENH: Clarify the position toward non-compliant derivative datasets and files #334 (effigies)
- [ENH] Clarify phenotypic and assessment data in new section #331 (sappelhoff)
- [MISC] add information about continuous integration checks to PR template #330 (sappelhoff)
- [FIX] Fix
Common principles
Key/value files
section level #328 (jhlegarreta) - [INFRA] Set the maximum heading length lint check to
false
#325 (jhlegarreta) - [FIX] Number explicitly all cases in MRI field map section headers #323 (jhlegarreta)
- [FIX] Add SoftwareFilters to EEG sidecar example #322 (Remi-Gau)
- [MISC] Fixing Travis errors with Remark #320 (franklin-feingold)
- [INFRA] Link to doc builds in CI checks #315 (jasmainak)
- [MISC] Add BEP027 - BIDS Execution to BEP list #314 (effigies)
- [FIX] Add CBV and phase to Entity table #312 (tsalo)
- [FIX] Separate out imaging-specific "common derivatives" #310 (effigies)
- [FIX] Revise template-generated coordinate systems #307 (oesteban)
- [FIX] Normalization of template-generated standard spaces #306 (oesteban)
- [ENH] Release protocol notes #304 (franklin-feingold)
- [INFRA] Adding contributor appendix sentence to PR template #299 (franklin-feingold)
- [ENH] Added discontinuous datatype for EEG and iEEG #286 (wouterpotters)
- [FIX] Clarify paragraph about custom data types #264 (effigies)
v1.2.1
- FIX: repair link in anatomical MRI table #297 (sappelhoff)
- [ENH] Clarify requirements in Release Protocol #294 (franklin-feingold)
- [INFRA+FIX] Use linkchecker (from a dedicated docker image) to check all URLs #293 (yarikoptic)
- [ENH] Adding Contributors and updating contributions #284 (franklin-feingold)
- [MISC] update Code of Conduct contact #281 (franklin-feingold)
- [ENH] Update contributing guide and README to make discussion forums easy to find #279 (emdupre)
- [ENH] Starter Kit dropdown menu #278 (franklin-feingold)
- [ENH] BEP Update #277 (franklin-feingold)
- [INFRA] Update pipenv #274 (sappelhoff)
- [INFRA] Transpose the entity table and link to text anchors describing each entity #272 (sappelhoff)
- [ENH] Add Twitter badge to README and link to website to landing page #268 (franklin-feingold)
- [ENH] adding release guidelines #267 (franklin-feingold)
- [FIX] Common principles: Fix filename in inheritance principle #261 (Lestropie)
- [MISC] update modality references #258 (sappelhoff)
- [INFRA] adding logo to RTD #256 (franklin-feingold)
- [INFRA] add footer, replacing mkdocs/material advert with Github link #250 (sappelhoff)
- [MISC] rename logo files, add a README of where they come from, fix favicon #249 (sappelhoff)
- [MISC] updating MEG doc links, manufacturer names, and adding a missing MEG example #248 (sappelhoff)
- [ENH] Add favicon to RTD #246 (franklin-feingold)
- [MISC] Update Authors in BEP025 #241 (josator2)
- [MISC] Document BEPs that are not active anymore, but have not been merged #240 (sappelhoff)
- [FIX] remove ManufacturersAmplifierModelName (again) #236 (robertoostenveld)
- [INFRA] Update release protocol #235 (effigies)
- REL: 1.3.0-dev #234 (effigies)
- [INFRA] Enable version panel for quickly finding previous versions #232 (effigies)
- [FIX] use \<label> for _desc- - not some \<value> + clarify \<value> #224 (yarikoptic)
- [FIX] Clarify Appendix II: The list of licenses only lists examples #222 (sappelhoff)
- [FIX] Trivial column header fix #220 (nicholst)
- [INFRA] Add clarification on merge methods to DECISION_MAKING #217 (sappelhoff)
- [INFRA] Enable permalink urls to appear at (sub)section headings #214 (yarikoptic)
- [INFRA] bump up mkdocs-materials version #211 (sappelhoff)
- [ENH] Various proposed changes to diffusion derivatives #205 (Lestropie)
- [MISC] Fix github username for @chrisgorgo #204 (chrisgorgo)
- [FIX] clarify example 3 in common principles (inheritance) #202 (sappelhoff)
- [MISC] Expand entity table for MEG/EEG/iEEG specific files #198 (sappelhoff)
- [FIX] make iEEG ToC more consistent with MEG and EEG #191 (robertoostenveld)
- [FIX] Clarify use of acq and task parameters in EEG, MEG, and iEEG #188 (sappelhoff)
- [FIX] clarify use of tools for CTF data renaming #187 (sappelhoff)
- [MISC] Add bep006 and bep010 to completed beps and fix links #186 (sappelhoff)
- [FIX] change file for definition of electrical stimulation labels from _electrodes.json to _events.json #185 (ezemikulan)
- [ENH] relax ieeg channel name requirements of letters and numbers only #182 (sappelhoff)
- [FIX] make MEG section headings and ToC consistent to the EEG and iEEG specs #181 (robertoostenveld)
- [FIX] make section headings and ToC consistent between meg and eeg specs #180 (robertoostenveld)
- [MISC] Spelling fixes #179 (DimitriPapadopoulos)
- [ENH] Alternative folder organization for raw, derived, and source data #178 (chrisgorgo)
- [INFRA] Adding instructions for naming PRs #177 (chrisgorgo)
- [MISC] Introducing Stefan Appelhoff as the first Maintainer #176 (chrisgorgo)
- [FIX] Clarify name of "BrainVision" format #175 (JegouA)
- [FIX] Fixes spelling of continuous #171 (emdupre)
- [FIX] Clarify continuous recording metadata fields #167 (effigies)
- [FIX] changed reference of
dcm2nii
todcm2niix
#166 (DimitriPapadopoulos) - [FIX] Removing a leftover file #162 (chrisgorgo)
- [ENH] Derived (processed) MR data #109 (chrisgorgo)
- [FIX] Specify marker file names for KIT data (MEG) #62 (monkeyman192)
- [FIX] Remove father-level for meg filetypes other than BTi/4D data #19 (teonbrooks)