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RefHar

License: GPL v3

Requirements

Software Version
python >= 3.6.0
pip >= 21.1.3

The program relies on myTypeset to parse the documents.

git clone https://github.com/MartinPaulEve/meTypeset.git

Installation

Download source and create virtual environment:

git clone https://github.com/biblhertz/RefHar.git
cd RefHar
python -m venv venv

From within the RefHar directory:

run the following in bash if you' re installing on Linux/Unix:

source venv/bin/activate

run the following in powershell if you' re installing on Windows: (one must change the execution policy to allow the script to run, see more)

.\venv\Scripts\Activate.ps1 

Now make sure pip is installed:

python -m pip install --upgrade pip
python -m pip --version

Install all requirements using pip:

pip install -r requirements.txt

Setup

Before running the program you must change the following in config.ini:

  • Set ProjectRoot variable to the full path of the directory where the RefHar source is located
    • in a Linux/Unix system: ProjectRoot = /home/<user>/RefHar
    • in a Windows system: ProjectRoot = C:\Users\<user>\Documents\RefHar
  • Set Workspace to any system folder that the user has read/write access.
    • in a Linux/Unix system: Workspace = /home/<user>/workspace or Workspace = /tmp/workspace
    • in a Windows system: Workspace = C:\Users\<user>\Documents\workspace
  • Set MeTypesetPath to the full path to bin\meTypeset.py file of the meTypeset project you have already cloned
    • in a Linux/Unix system: MeTypesetPath = /home/<user>/meTypeset/bin/meTypeset.py
    • in a Windows system: MeTypesetPath = C:\Users\<user>\Documents\meTypeset\bin\meTypeset.py

Using custom configuration file

You can specify a different configuration filename than config.ini by setting the environment variable REFCY_CONF, so you can keep the supplied file as a reference. For example, on *nix systems:

export REFCY_CONF=my.config.ini

Run Standalone

From within the RefHar directory run:

flask run

Run tests

From within the RefHar directory run:

python -m unittest discover

Using Docker

Development

In order to develop the application using docker run:

docker-compose -f docker-compose.yml up -d

Production

In order to deploy the application to production using gunicorn run:

docker-compose -f docker-compose-production.yml up -d

One should consider setting the environment variable REFCY_SECRET_KEY in order to encrypt the users' sessions.

Usage Rights

RefHar depends on meTypeset, which is under the GNU General Public License version 2, and x3ml, which is under the Apache License 2.0. For rights compatibility, it is available under the GNU General Public License 3.

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

See LICENSE file for the full GPLv3 text.

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Reference harmonizer for transdisciplinary articles

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