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DESCRIPTION
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DESCRIPTION
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Package: consensusOV
Type: Package
Title: Gene expression-based subtype classification for high-grade
serous ovarian cancer
Version: 1.25.1
Date: 2024-02-05
Authors@R: c(
person('Gregory', 'Chen', 'M', role=c('aut')),
person('Lavanya', 'Kannan', role=c('aut')),
person('Ludwig', 'Geistlinger', role=c('aut')),
person('Victor', 'Kofia', role=c('aut')),
person('Levi', 'Waldron', role=c('aut')),
person('Christopher', 'Eeles', email='christopher.eeles@uhnresearch.ca', role=c('ctb')),
person('Benjamin', 'Haibe-Kains', email='benjamin.haibe.kains@utoronto.ca', role=c('aut', 'cre'))
)
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>
Description: This package implements four major subtype classifiers for
high-grade serous (HGS) ovarian cancer as described by Helland
et al. (PLoS One, 2011), Bentink et al. (PLoS One, 2012),
Verhaak et al. (J Clin Invest, 2013), and Konecny et al. (J
Natl Cancer Inst, 2014). In addition, the package implements a
consensus classifier, which consolidates and improves on the
robustness of the proposed subtype classifiers, thereby
providing reliable stratification of patients with HGS ovarian
tumors of clearly defined subtype.
License: Artistic-2.0
Depends: R (>= 3.6)
Imports:
Biobase,
GSVA (>= 1.50.0),
gdata,
genefu,
limma,
matrixStats,
randomForest,
stats,
utils,
methods,
BiocParallel
URL: http://www.pmgenomics.ca/bhklab/software/consensusOV
Suggests: BiocStyle, ggplot2, knitr, rmarkdown, magick
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.1
LazyData: true
biocViews: Classification, Clustering, DifferentialExpression,
GeneExpression, Microarray, Transcriptomics
BugReports: https://github.com/bhklab/consensusOV/issues