Snake file Issues: InvalidGitRepository

[nugrahapraja]

I tried to run tutorial script for Lathe.
However, I come with InvalidGitRepositoryError in line 33 /path/to/Snakefile

How can I solved this issue?

Thank you

Husna

snakemake --use-singularity --singularity-args '--bind /tutorial/ --bind /scg/ --bind /home/' -s Snakefile --configfile ./tutorial/config_nobasecalling1.yaml --restart-times 0 --keep-going --latency-wait 30 --cores 2 Building DAG of jobs... Pulling singularity image docker://quay.io/biocontainers/quast:5.0.2--py27pl526ha92aebf_0. Using shell: /usr/bin/bash Provided cores: 2 Rules claiming more threads will be scaled down. Unlimited resources: mem, time Job counts: count jobs 3 align_bam 1 all 1 assemble_final 2 assemble_flye 3 bam_idx 1 basecall_final 4 faidx 1 final 1 merge 3 misassemblies_correct 3 misassemblies_detect 1 nanoplot 1 pilon_aggregate_vcf 1 pilon_consensus 1 pilon_ranges 1 polish_final 1 quast_final 29 Checking for updates or modifications to workflow InvalidGitRepositoryError in line 33 of /home/path/to/lathe-master/Snakefile: /home/path/to/lathe-master/ File "/home/path/to/lathe-master/Snakefile", line 33, in __onstart File "/home/path/to/miniconda3/lib/python3.7/site-packages/git/repo/base.py", line 181, in __init__