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Hi, i found this program very appropriate for assembling bacterial genome from both long and short reads (genome sequence data only and not metagenome). Can you help me how can I run the program when the initial file I have is fastq file rather than fast5 file ? As i try to remove the basecalling function but it is giving error at later stages. I didnt have enough knowledge of snakemake rules and calling. Also which steps can be removed if its single genome sequence data and not metagenome.
The text was updated successfully, but these errors were encountered:
Hi, i found this program very appropriate for assembling bacterial genome from both long and short reads (genome sequence data only and not metagenome). Can you help me how can I run the program when the initial file I have is fastq file rather than fast5 file ? As i try to remove the basecalling function but it is giving error at later stages. I didnt have enough knowledge of snakemake rules and calling. Also which steps can be removed if its single genome sequence data and not metagenome.
The text was updated successfully, but these errors were encountered: