SDEV-4155 - switch to source.displayName for Pharmacogenomic filterin… #116
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…g - so same properties can be used to filter pori_ipr_python kbmatches. Replaced PHARMACOGENOMIC_SOURCE_EXCLUDE_LIST with GSC_PHARMACOGENOMIC_SOURCE_DISPLAYNAME_EXCLUDE_LIST.
dustinbleile
requested review from
darenillas,
mathieulemieux,
creisle,
elewis2,
calchoo,
Nithriel and
a team
|
Looks like the updates for black will need to be done first, before these github builds will work. |
elewis2
requested changes
Feb 16, 2024
graphkb/genes.py
Outdated
| ], | ||
| }, | ||
| ignore_cache=False, | ||
| ): | ||
| if record["source"]: # type: ignore | ||
| if record["source"]["name"].lower() in PHARMACOGENOMIC_SOURCE_EXCLUDE_LIST: # type: ignore | ||
| if record["source"]["displayName"] in GSC_PHARMACOGENOMIC_SOURCE_DISPLAYNAME_EXCLUDE_LIST: # type: ignore |
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can we make the exclude list passable as a parameter?
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Sure, done.
But let's not worry too much about this, given Yaoqin's statements on the ticket, about using other methods to select.
…RCE_DISPLAYNAME_EXCLUDE_LIST.
mathieulemieux
approved these changes
Feb 22, 2024
elewis2
approved these changes
Feb 29, 2024
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…g - so same properties can be used to filter pori_ipr_python kbmatches. Replaced PHARMACOGENOMIC_SOURCE_EXCLUDE_LIST with GSC_PHARMACOGENOMIC_SOURCE_DISPLAYNAME_EXCLUDE_LIST.