Update xml_read.m #212
Workflow file for this run
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| # This is a basic workflow to help you get started with Actions | |
| name: Non-Use case tests | |
| # Controls when the workflow will run | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the master branch | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # Default settings | |
| defaults: | |
| run: | |
| shell: bash | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| not_large: | |
| name: Run all tests that do NOT have the Large tag | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-20.04 | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| - name: Free Disk Space (Ubuntu) | |
| uses: jlumbroso/free-disk-space@main | |
| with: | |
| tool-cache: true | |
| android: true | |
| dotnet: true | |
| haskell: true | |
| large-packages: true | |
| swap-storage: true | |
| - name: Create test space | |
| run: | | |
| sudo mkdir /test | |
| sudo chown runner: /test | |
| sudo chmod u+w /test | |
| echo "Free space:" | |
| df -h | |
| - name: Set git to use LF | |
| run: | | |
| git config --global core.autocrlf false | |
| git config --global core.eol lf | |
| - name: Check out repository under $GITHUB_WORKSPACE | |
| uses: actions/checkout@v3 | |
| - name: Set up Python 3.6 | |
| uses: actions/setup-python@v4 | |
| with: | |
| # Semantic version range syntax or exact version of a Python version | |
| python-version: '3.6' | |
| # Optional - x64 or x86 architecture, defaults to x64 | |
| architecture: 'x64' | |
| - name: Set up MATLAB | |
| uses: matlab-actions/setup-matlab@v1 | |
| with: | |
| # MATLAB release to set up R2020a | |
| release: R2020a | |
| - name: Install tools and configure aa | |
| run: | | |
| python trigger_install.py | |
| working-directory: ${{github.workspace}}/.github/workflows | |
| env: | |
| LOAD_FSL: 0 | |
| LOAD_FREESURFER: 0 | |
| PARAMETER_XML: aap_parameters_defaults_GitHub.xml | |
| - name: Run script | |
| uses: matlab-actions/run-command@v1 | |
| with: | |
| command: addpath(getenv('GITHUB_WORKSPACE')); aa_ver5; SPM = spmClass(fullfile('/test','tools','spm12')); SPM.load; aa_test('haltonerror', true, 'not_tags', {'Large'}); aa_test_getreport('/test/projects','/test/projects/report') | |
| env: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| AWS_EC2_METADATA_DISABLED: true | |
| - name: Archive data | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: data_${{github.job}} | |
| path: | | |
| /test/projects/report/ | |
| - name: Archive log | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: testlog_${{github.job}} | |
| path: | | |
| ${{github.workspace}}/developer/aa_test.log | |
| tutorial_minimal: | |
| # Since aa states that the minimal tools needed are only aa and spm, and at least some of the | |
| # examples should work correctly with just those installed. | |
| name: Run all tutorial tests with only a minimal parameter xml / tools install | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-20.04 | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| - name: Free Disk Space (Ubuntu) | |
| uses: jlumbroso/free-disk-space@main | |
| with: | |
| tool-cache: true | |
| android: true | |
| dotnet: true | |
| haskell: true | |
| large-packages: true | |
| swap-storage: true | |
| - name: Create test space | |
| run: | | |
| sudo mkdir /test | |
| sudo chown runner: /test | |
| sudo chmod u+w /test | |
| echo "Free space:" | |
| df -h | |
| - name: Set git to use LF | |
| run: | | |
| git config --global core.autocrlf false | |
| git config --global core.eol lf | |
| - name: Check out repository under $GITHUB_WORKSPACE | |
| uses: actions/checkout@v3 | |
| - name: Set up Python 3.6 | |
| uses: actions/setup-python@v4 | |
| with: | |
| # Semantic version range syntax or exact version of a Python version | |
| python-version: '3.6' | |
| # Optional - x64 or x86 architecture, defaults to x64 | |
| architecture: 'x64' | |
| - name: Set up MATLAB | |
| uses: matlab-actions/setup-matlab@v1 | |
| with: | |
| # MATLAB release to set up R2020a | |
| release: R2020a | |
| - name: Install tools and configure aa | |
| run: | | |
| python trigger_install.py | |
| working-directory: ${{github.workspace}}/.github/workflows | |
| env: | |
| # Do not even install the FSL standards | |
| LOAD_FSL: 0 | |
| LOAD_FREESURFER: 0 | |
| PARAMETER_XML: aap_parameters_defaults_GitHub_minimal.xml | |
| - name: Run script | |
| uses: matlab-actions/run-command@v1 | |
| with: | |
| command: addpath(getenv('GITHUB_WORKSPACE')); aa_ver5; SPM = spmClass(fullfile('/test','tools','spm12')); SPM.load; aa_test('haltonerror', true, 'tags', {'Minimal_install'}); aa_test_getreport('/test/projects','/test/projects/report') | |
| - name: Archive data | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: data_${{github.job}} | |
| path: | | |
| /test/projects/report/ | |
| - name: Archive log | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: testlog_${{github.job}} | |
| path: | | |
| ${{github.workspace}}/developer/aa_test.log |