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Achievement: Pull SharkAchievement: Arctic Code Vault ContributorAchievement: Starstruck
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Pinned

  1. wgd wgd Public

    Python package and CLI for whole-genome duplication related analyses. This package is deprecated in favor of https://github.com/heche-psb/wgd.

    Python 77 40

  2. Whale.jl Whale.jl Public

    Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation

    Julia 11 5

  3. Beluga.jl Beluga.jl Public

    Statistical analysis of gene family evolution using phylogenetic birth-death processes and WGD inference using rjMCMC

    Julia 8 2

  4. NewickTree.jl NewickTree.jl Public

    Newick formatted (phylogenetic) trees

    Julia 8 3

  5. DeadBird.jl DeadBird.jl Public

    Statistical analysis of comparative genomic data using phylogenetic birth-death process models

    Julia 2

  6. TwoTypeDLModel TwoTypeDLModel Public

    Inference for a two type continuous-time branching process model of gene family evolution

    Julia 2