pRideMetadb

A R-package for meta data query of PRIDE database.

Introduction

Introduction to this R-package is available in vignettes.

TODO list

• Create S3 functions using PRIDE API
• convert S3 to S4 Class to Query PRIDE database
  • Project
  • Assay
  • File
  • Protein
  • Peptide
• Create a SQLite3 database

DONE

• S3 functions available
  • getPrideProject
  • getProjectList
  • getProjectCount
  • getAllPrideProject