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45 Open 82 Closed
45 Open 82 Closed
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Issues list

weird variant TSV output
#179 opened May 2, 2024 by Norina28
header format of .tsv did not match!
#178 opened Apr 25, 2024 by zdk427
3
Does ivar trim only from the ends of aligned BAM files?
#177 opened Apr 10, 2024 by yl315504
1
iVAR inappropriately shifts position of reverse mapped reads for ONT data
#175 opened Mar 18, 2024 by Alan-Collins
@cmaceves
6
Parsing GFF_FEATURE
#174 opened Mar 13, 2024 by jfouret
Variants returns multiple AA with 1.00 frequency
#173 opened Jan 31, 2024 by shoulton-invivyd
2
REF_AA not consistent with actual AA at the position from reference protein fasta file
#172 opened Jan 16, 2024 by Shawn-X-Zhang
2
Header format error in ivar filtervariants
#171 opened Nov 29, 2023 by fshepherd13
@cmaceves
1
Segmentation fault (core dumped)
#170 opened Jul 25, 2023 by mksingh2104
5
Further speedup in iVar Trim primer finding enhancement New feature or request
#162 opened Apr 5, 2023 by niemasd v1.4.3
@cmaceves
3
Clarification of new ivar consensus -c (minimum insertion frequency) parameter
#149 opened Feb 13, 2023 by wm75
@cmaceves
Concurrency for ivar trim? enhancement New feature or request
#139 opened Oct 9, 2022 by philiptzou
@cmaceves
10
ivar consensus: call reference at positions with low coverage enhancement New feature or request
#131 opened Jun 23, 2022 by alephreish
1
Ivar variants issue with indels
#126 opened Apr 4, 2022 by Alema91
1
Allow different thresholds for insertions and SNVs enhancement New feature or request
#114 opened Jan 7, 2022 by bwlang
@gkarthik @cmaceves
2
How does ivar handle samtools mpileup output for overlapping Paired-End Reads?
#113 opened Dec 13, 2021 by ggrimes
1
How does ivar deal with conflicting/overlapping variants?
#104 opened Jun 23, 2021 by charlesfoster
Inconsistency between ivar consensus and ivar variants
#103 opened Jun 14, 2021 by IsabelFE
5
Incorrect read position for single end reads
#102 opened Jun 7, 2021 by Ivarz
@gkarthik
1
iVar variants inconsistency
#100 opened May 18, 2021 by gianfilippo
2
GFF file not recognized
#98 opened May 11, 2021 by domenico-simone
@cmaceves
6
ivar consensus: option -q is not filtering low quality bases
#97 opened Apr 23, 2021 by pmenzel
@gkarthik
1
ivar variants: reducing q-score threshold results in high P-value for deletion
#96 opened Apr 22, 2021 by pmenzel
1
iVar doesnt trim right end of single end reads
#94 opened Apr 1, 2021 by JenkoB
1
iVar trim taking a long time/endless loop
#93 opened Mar 29, 2021 by ptskidmore
@gkarthik
4
ProTip! no:milestone will show everything without a milestone.