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LICENSE STARS FORKS

Welcome to the kadambari!

Current collection include the following -

Python scripts

  • 1000gpca.py (1000 Genomes Project)
  • TSNE.py
  • categorized_gramox.py
  • combine_data.py
  • common_seqs_count.py
  • correlation.py
  • count_ChrX_variants.py (1000 Genomes Project)
  • count_singletons.py (1000 Genomes Project)
  • count_variants.py (1000 Genomes Project)
  • count_variant_sites.py   (1000 Genomes Project)
  • craigslist_search.py
  • dissimilarity_overlap_curve.py
  • fill_empty_gramox_data.py
  • get_core_ids.py
  • get_fastq_quality_stats.py
  • gramox_calc.py
  • gramox_to_itol_color.py
  • grep_count_seqs.py
  • haploid_local_ancestry_inference.py (1000 Genomes Project)
  • merge_hap_htz_counts.py (1000 Genomes Project)
  • merge_with_pear.py
  • otu_metadata_db.py
  • overlap_comparisons.py
  • pct_abd_gramox.py
  • plot_MA.py
  • plot_ancestry.py
  • plot_autosomal_heterozygosity.py (1000 Genomes Project)
  • plot_heterozygosity.py (1000 Genomes Project)
  • remove_duplicate_genes.py
  • run_merge_cmd.py
  • run_qual_filter_cmd.py
  • trim_five_prime_end_adapters.py
  • trim_three_prime_end_adapters.py

R scripts

  • LDA.R
  • PCA.R
  • upsetR_venn_alternative_example.R

Bash scripts

  • concat_R1_R2_files.sh
  • get_R1_R2_md5.sh
  • integrated_assignment_rnaseq.sh (from CSHL course)
  • runpy.sh