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@akiyamalab

Akiyama Lab.

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  1. MEGADOCK MEGADOCK Public

    An ultra-high-performance protein-protein docking for heterogeneous supercomputers

    C++ 42 31

  2. ghostz ghostz Public

    GHOSTZ: A high-speed homology search tool to detect remote homologues like BLAST using database subsequence clustering.

    C++ 3 2

  3. ghostz-gpu ghostz-gpu Public

    A GPU-accelerated sequence homology search tool using database subsequence clustering

    HTML 9 5

  4. BO-DTI BO-DTI Public

    Scripts for "Efficient Hyperparameter Optimization by Using Bayesian Optimization for Drug-Target Interaction Prediction"

    Python 7 3

  5. NRLMFb NRLMFb Public

    NRLMFβ: Bata-distribution-rescored Neighborhood Regularized Logistic Matrix Factorization for Improving Performance of Drug–Target Interaction Prediction

    Python 11 1

  6. SPDRank SPDRank Public

    Learning-to-Rank Technique based on Ignoring Meaningless Ranking Orders between Compounds

    Python 3 2

Repositories

Showing 10 of 17 repositories
  • restretto Public

    REstretto (REuse of sub-STRuctures as an Effective Technique for protein-ligand docking TOol): An virtual screening-oriented protein-ligand docking tool with reuse of fragments

    C++ 6 MIT 2 8 0 Updated Apr 14, 2024
  • Python 4 MIT 1 0 0 Updated Feb 22, 2024
  • MEGADOCK Public

    An ultra-high-performance protein-protein docking for heterogeneous supercomputers

    C++ 42 31 2 0 Updated Dec 10, 2023
  • Python 4 BSD-3-Clause 0 0 0 Updated May 17, 2023
  • NNSim Public
    Roff 0 MIT 1 1 0 Updated Jul 25, 2022
  • JavaScript 0 0 0 0 Updated Feb 24, 2022
  • exprorer Public Forked from keisuke-yanagisawa/exprorer

    EXPRORER: Rational cosolvents set construction method for cosolvent molecular dynamics (CMD) with large-scale computation

    C++ 0 GPL-3.0 2 0 0 Updated Feb 3, 2022
  • NRLMFb Public

    NRLMFβ: Bata-distribution-rescored Neighborhood Regularized Logistic Matrix Factorization for Improving Performance of Drug–Target Interaction Prediction

    Python 11 GPL-2.0 1 0 0 Updated Oct 12, 2021
  • tsss Public

    Homology search software based on two-step seed search strategy

    C++ 0 MIT 0 0 0 Updated Oct 12, 2021
  • mpidp Public

    A task processing framework implemented in C++ using MPI library

    C++ 0 Apache-2.0 0 0 0 Updated Jan 15, 2020

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