This repository is a collection of published gene expression datasets, generated using, mainly and classically, microarray and RNA-Seq studies. These datasets are used for group projects on gene expression data analysis at AUC.
The following table lists the currently available datasets in the repository sorted somehow according to the complexity (number of conditions) of the dataset:
| Dataset | Description | Organism | NCBI PMID | NCBI GEO |
|---|---|---|---|---|
| IRF6 | Cleft lip and palate | Mouse | 17041601 | GSE5800 |
| HDAC1 | Histone deacetylase 1 | Mouse | 16940178 | GSE5583 |
| Huntington's | Huntington's disease | Human | 16043692 | GSE8762 |
| Parkinson's | Parkinson's disease | Human | 26510930 | GSE72267 |
| Leukemia | Acute myeloid leukemia (AML) and acute lymphoblastic leukemia (ALL) | Human | 10521349 | |
| African Apes | Human and African great ape fibroblasts | Multiple | 12840040 | GSE426 & GSE429 |
| Primates Diet | Liver | Mouse | 18231591 | GSE6285 |
| Medulloblastoma | Brain tumour | Human | 22722829 | GSE37418 |
| COVID-19 | COVID-19 severity | Human | 33096026 | GSE157103 |
| Cell Cycle | Cell cycle | Yeast | 9843569 | |
| Cognitive Aging | Cognitive Aging | Rat | 19211887 | GSE9990 |