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DE_analysis

DE_analysis

 
 

ExampleData

ExampleData

 
 

Mapping_and_counting

Mapping_and_counting

 
 

QC_analysis

QC_analysis

 
 

ConfigFile.txt

ConfigFile.txt

 
 

README.txt

README.txt

 
 

SPARTA.py

SPARTA.py

 
 

check_dependencies_linux.py

check_dependencies_linux.py

 
 

differential_expression.py

differential_expression.py

 
 

install_dependencies.sh

install_dependencies.sh

 
 

install_edger.r

install_edger.r

 
 

mapping_and_counting.py

mapping_and_counting.py

 
 

qc_analysis.py

qc_analysis.py

 
 

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Welcome to SPARTA!

SPARTA is a Simple Program for Automated reference-based, bacterial RNA-seq Transcriptome Analysis. 

Please go to sparta.readthedocs.org for the tutorial.

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