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Augustus busco not running with a conda install #253

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nbat64 opened this issue Oct 2, 2023 · 0 comments
Open

Augustus busco not running with a conda install #253

nbat64 opened this issue Oct 2, 2023 · 0 comments

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@nbat64
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nbat64 commented Oct 2, 2023

Hello,
I am trying to run busco within Quast, but I have error with Augustus. I made an installation with mamba of Quast 5.2.0.

The error message in the log of Augustus:

/soft/2019013/Conda_env/quast/lib/python3.10/site-packages/quast_libs/augustus3.2.3/bin/augustus: ERROR
	PP::Profile: Error parsing pattern file"/soft/2019013/Conda_env/quast/lib/python3.10/site-packages/quast_libs/busco/bacteria/prfl/POG091H001O.prfl", line 8.

I have also installed a more recent version of Augustus (3.5.0) in the same conda environment. But how do you ask to quast to use this version rather than:

/soft/2019013/Conda_env/quast/lib/python3.10/site-packages/quast_libs/augustus3.2.3/bin/augustus

Is it with a new soft link to:

/soft/2019013/Conda_env/quast/bin/augustus

I am not sure that the new version of Augustus will fix the issue?

Thanks for the help

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