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MetaQUAST 5.2.0 reference genome "not in list" error when "Summarizing results..." #248

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mitchawitt1 opened this issue Jul 10, 2023 · 0 comments

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@mitchawitt1
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I'm running a command that is structured like this:

metaquast contig_1 contig_2 contig_3 -R directory_of_references -o output_directory

where directory_of_refernces contains 10 FASTA files

I get the following error with my first reference when MetaQUAST starts summarizing

Summarizing results...

'MGYG000000001_clean' is not in list
Traceback (most recent call last):
  File "/home/miw4007/anaconda3/envs/quast_env/bin/metaquast", line 427, in <module>
    return_code = main(sys.argv[1:])
  File "/home/miw4007/anaconda3/envs/quast_env/bin/metaquast", line 410, in main
    create_meta_summary.do(html_summary_report_fpath, summary_output_dirpath, combined_output_dirpath,
  File "/pbtech_mounts/homes064/miw4007/anaconda3/envs/quast_env/opt/quast-5.2.0/quast_libs/create_meta_summary.py", line 75, in do
    get_results_for_metric(ref_names, metric, contigs_num, labels, output_dirpath_per_ref, qconfig.transposed_report_prefix + '.tsv')
  File "/pbtech_mounts/homes064/miw4007/anaconda3/envs/quast_env/opt/quast-5.2.0/quast_libs/create_meta_summary.py", line 42, in get_results_for_metric
    index_contig = labels.index(values[0])
ValueError: 'MGYG000000001_clean' is not in list
ERROR! exception caught!
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