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Plots in text format #228

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MartaBenegas opened this issue Nov 7, 2022 · 0 comments
Open

Plots in text format #228

MartaBenegas opened this issue Nov 7, 2022 · 0 comments

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@MartaBenegas
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MartaBenegas commented Nov 7, 2022

Hi QUAST team!

I've just started using QUAST and I was wondering if there's a way to save the plots in a text file. That is, tab files with the coordinates of the plot. For example, for the Nx plot:
image

Something like this:

NX    Contig length (bp)
0      4000
20     4000
40     4000
60     1600
80     1600
100    1200

The same for the rest of the plots. I ask this because I would like to draw my own plots, so I need the data. EDIT: I don't see the data plotted in any report. For example, it only contains N50 and N90 and I can't find the data for the cumulative plot either, etc.

Thanks!

EDIT: I've run this basic analysis:
python2 quast.py test_data/contigs_1.fasta -o /data/

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