HomoHeatMapper: A perl script designed to generate heat maps from matrices of probabilities generate by Homo v2.0
HomoHeatMapper
1.0
Copyright © 2019 Bernhard Misof. All rights reserved.
The copyright holder takes no legal responsibility for the correctness of results obtained using this program.
Bernhard Misof
Center for Molecular Biodiversity Research Zoological Research Museum A. Koenig Bonn, Germany
2 November 2019
HomoHeatMapper produces a heat map from a distance matrix with probabilities obtained using Homo v2.0 (https://github.com/lsjermiin/Homo.v2.0).
The smaller a probability is, the darker the corresponding pixel in the heat map is.
Probabilities must be saved in a text file with comma-separated values (.csv).
The first line must contain the number of samples being compared.
Each of the following lines must start with a sample name, and then followed by the probabilities, one for each comparison involving the named sample.
See file labelled 22_root_Pvalues.csv.
To install HomoHeatMapper.pl, type (in the command line):
sudo cp HomoHeatMapper.pl /usr/local/bin/.
HomoHeatMapper -i <infile.csv> <-t|f>
-t = triangular heat map; -f = square heat map
Software complete
Contact author for updates, etc
Jermiin LS, Lovell DR, Misof B, Foster PG, Robinson J. Software for detecting heterogeneous evolutionary processes across aligned sequence data. Syst. Biol. (submitted)