Pinned

1. python-bioimage-analysis-tutorial python-bioimage-analysis-tutorial Public

   A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.

   Jupyter Notebook 88 35

2. data-driven-analysis-lateralline data-driven-analysis-lateralline Public

   This repository hosts the code for "An Image-Based Data-Driven Analysis of Cellular Architecture in a Developing Tissue" (Hartmann et al., 2020).

   Jupyter Notebook 4 2

3. opto-notch-adaptation opto-notch-adaptation Public

   This repository hosts the code for "Desensitisation of Notch signalling through dynamic adaptation in the nucleus" (Viswanathan, Hartmann et al., 2021).

   Jupyter Notebook

4. cavity_expansion cavity_expansion Public

   This repo hosts the code for "Competence for neural crest induction is controlled by hydrostatic pressure through YAP" (Alasaadi et al., 2024).

   Jupyter Notebook 2

5. TrackTree TrackTree Public

   Nice visualization of timecourse data obtained from tracking dividing/splitting objects.

   Jupyter Notebook 4 2

6. tissue_exploder tissue_exploder Public

   Create a nice exploded visualization of segmented cells in a tissue.

   Python 5 1