Update ci-miniconda.yml #4

	name: DrTransformer in a miniconda setup

	on: [push]

	jobs:
	trafo-tests:
	name: trafo-env (${{ matrix.python-version }}, ${{ matrix.os }})
	runs-on: ${{ matrix.os }}
	defaults:
	run:
	shell: bash -el {0}
	strategy:
	fail-fast: false
	matrix:
	os: ["ubuntu-latest", "macos-latest"]
	python-version: ["3.8", "3.9", "3.10"]

	steps:
	- uses: actions/checkout@v3
	- uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true
	activate-environment: trafo
	python-version: ${{ matrix.python-version }}
	# The order of channes is in reverse! Very important
	channels: conda-forge,bioconda,defaults
	channel-priority: strict
	- name: Conda info
	run: \|
	conda info
	conda list
	- name: Install viennarna
	run: \|
	conda install "viennarna==2.5.1"
	- name: Install devtools
	run: \|
	conda install flake8 pytest pytest-cov
	- name: Install package
	run: \|
	python -m pip install .
	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Test with pytest
	run: \|
	pytest --cov=drtransformer tests/ --cov-report xml
	- name: Upload coverage
	uses: codecov/codecov-action@v3
	if: ${{ success() }}

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