BleTIES MILRAA using CCS reads cross-mapped onto Loxodes magnus Falcon reference assemblies.
Snakemake workflow files are in subfolder ./workflow; Snakemake options are
in the script run_snakemake.sh
Input files for this workflow are genome assemblies and read mappings for L.
magnus, listed in workflow/config.yml. Workflow to produce these files:
loxodes-assembly-workflow.
Input data are available from: "Loxodes magnus genome assemblies and annotations", https://doi.org/10.17617/3.9QTROS, Edmond.
Results of variant calling are available from: "Loxodes magnus indel polymorphisms and variant calling", https://doi.org/10.17617/3.NEV8C1, Edmond.
- Genomic sequencing for sorted MIC vs. MAC of Loxodes magnus: European Nucleotide Archive PRJEB55123