MycoSNP (StaPH-B)

C. auris analysis workflow developed by the CDC translated for Nextflow

Please change all file paths before testing!

This includes all input channels and all output directories that may be within processes (publishDir"...")

Test files can be found from the CDC MycoSNP repo

Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
README.md		README.md
mycosnp_bwa_pp.nf		mycosnp_bwa_pp.nf
mycosnp_bwa_ref.nf		mycosnp_bwa_ref.nf
nextflow.config		nextflow.config