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Rudge Lab

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http://rudge-lab.org
@rudgelab

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README.md

RudgeLab

Synthetic Biology, Computational Biology and Complex Systems lab in the ICOS research group at Newcastle University run by Dr. Tim Rudge.

Useful resources

Contact: tim.rudge@newcastle.ac.uk

Lab code of conduct

How to contribute

Featured Software Tools

Genetic Design Automation: LOICA

Build Automation Control: PUDU

Data Management and Analysis: Flapjack

Bacterial Idividual Based Modelling: CellModeller

Pinned

LOICA LOICA Public

Logical Operators for Integrated Cell Algorithms

Jupyter Notebook 6 2
CellModeller CellModeller Public

Forked from cellmodeller/CellModeller

GPU-accelerated multicellular modelling framework

Python 1 1
Inverse_Characterization Inverse_Characterization Public

Accurate Characterization of Dynamic Gene Expression and Growth Rate Profiles

Jupyter Notebook
WebCM WebCM Public

WebCM is a web platform used to develop and run bacterial simulations

JavaScript

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Showing 10 of 35 repositories

PUDU Public
Protocol Unified Design Unit

Python 4 MIT 0 19 (3 issues need help) 0 Updated Apr 25, 2024
napari-popdyn Public
Napari plugin for quantitative population dynamics analysis

Python 0 MIT 0 0 0 Updated Apr 4, 2024
popdyn Public
Population dynamics

Python 0 0 0 0 Updated Apr 4, 2024
WebCM Public
WebCM is a web platform used to develop and run bacterial simulations

JavaScript 0 MIT 0 0 0 Updated Mar 22, 2024
brain Public
Reservoir computing with coupled genetic oscillators

MATLAB 1 BSD-2-Clause 0 0 0 Updated Feb 27, 2024
CellModeller Public Forked from cellmodeller/CellModeller
GPU-accelerated multicellular modelling framework

Python 1 46 0 1 Updated Feb 23, 2024
GenePhLo Public
Phase-based genetic logic circuit simulation

0 0 0 0 Updated Feb 15, 2024
FluoPi Public
Code and teaching materials for UC/BackyardBrains raspberry pi "macro" scope.

Jupyter Notebook 26 15 2 3 Updated Dec 30, 2023
LOICA Public
Logical Operators for Integrated Cell Algorithms

Jupyter Notebook 6 MIT 2 12 0 Updated Sep 27, 2023
CellModeller5 Public

C++ 0 MIT 0 0 0 Updated Aug 13, 2023

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