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@QI2lab

QI2 lab

Quantitative Imaging and Inference Lab

Pinned

  1. mcSIM mcSIM Public

    Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and performing SIM reconstruction.

    Python 46 11

  2. OPM OPM Public

    Control, reconstruction, and analysis code for oblique plane microscopy.

    Python 20 6

  3. localize-psf localize-psf Public

    Code for localizing diffraction limited fluorescent objects and fitting the results to various different point-spread function (PSF) models.

    Python 5 1

  4. I2K2022-SIM I2K2022-SIM Public

    I2K 2022 mcSIM tutorial

    Jupyter Notebook 4

  5. napari-mcsim napari-mcsim Public

    Napari plugin automating structured illumination microscopy (SIM) reconstruction and diagnostics from the mcSIM package

    Python 1

Repositories

Showing 10 of 21 repositories
  • mcSIM Public

    Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and performing SIM reconstruction.

    Python 46 GPL-3.0 11 0 0 Updated Apr 27, 2024
  • navigate Public Forked from TheDeanLab/navigate

    navigate - open source light-sheet microscope controls

    Python 0 5 0 0 Updated Apr 26, 2024
  • napari-micromanager Public Forked from pymmcore-plus/napari-micromanager
    Python 0 BSD-3-Clause 19 0 0 Updated Apr 25, 2024
  • localize-psf Public

    Code for localizing diffraction limited fluorescent objects and fitting the results to various different point-spread function (PSF) models.

    Python 5 GPL-3.0 1 0 0 Updated Apr 18, 2024
  • U-FISH Public Forked from UFISH-Team/U-FISH

    Deep learning based spot detection for FISH images.

    Jupyter Notebook 0 MIT 4 0 0 Updated Apr 7, 2024
  • ray_trace_pb Public

    Simple ray tracing in Python

    Python 0 GPL-3.0 0 0 0 Updated Apr 2, 2024
  • spots3d Public

    GPU accelerated spot finding and localization for both skewed (diSPIM, lattice, OPM) and standard geometry (widefield, confocal) 3D microscopy data.

    Python 0 GPL-3.0 1 0 0 Updated Mar 30, 2024
  • napari-spot-detection Public

    Detect diffraction limited spots in 2D and 3D, in standard or skewed microscopy images.

    Python 3 GPL-3.0 0 0 0 Updated Feb 28, 2024
  • OPM Public

    Control, reconstruction, and analysis code for oblique plane microscopy.

    Python 20 GPL-3.0 6 0 0 Updated Nov 2, 2023
  • ProjectionSimulation Public

    Simple simulation to compare standard and projection imaging

    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 9, 2023
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