yarikoptic
released this
27 Aug 16:24
·
262 commits
to master
since this release
Primarily a bugfix release with some added new functionality. People contributed
code to the release: Matteo Visconti dOC, Yaroslav Halchenko, Nikolaas N. Oosterhof,
Feilong Ma, Christopher J. Markiewicz, Swaroop Guntupalli.
- IMPORTANT possibly backward-incompatible fixes
- Dataset's :func:
~mvpa2.base.dataset.vstack
and :func:~mvpa2.base.dataset.hstack
now by default would drop those feature or sample (fa
,sa
) attributes
which do not have the same value across all datasets ("drop_nonunique").
Previous behaviour was to update aggregated collections, so the attribute
value of the last dataset would have been stored in the stacked dataset.
Such behaviour could be brought back byfa="update"
forvstack
or
similar value forsa="update"
forhstack
calls.
If you find that somesa
/fa
you have relied on using in your code is no
longer available after stacking, verify that you did intend to maintain the
"last known" value, and adjust argument in stacking function to "update".
- Dataset's :func:
- Fixes
- Fixed minor bug in computing ico linear divisions while working with surfaces
- Handling of
ref_ds
in :class:~mvpa2.algorithms.searchlight_hyperalignment.SearchlightHyperalignment
- Compatibility fixes for :mod:
scipy
0.18.0 and :mod:nibabel
2.1.0.
- New functionality
pymvpa2 scatter
command line and :mod:~mvpa2.misc.plot.scatter
module to scatter plot
datasets and nifti volumes, with coloring based on spatial location (see
e.g. OHBM12 poster
for an example, proper demo is coming)
- Enhancements
- Allow for "4D" mri mask volumes with degenerate time dimension (e.g. coming
from AFNI) pymvpa2 ttest
could operate now on h5save'd datasets- It is possible now to
h5save
trained Hyperalignment instances - :class:
~mvpa2.generators.resampling.Balancer
and
:class:~mvpa2.generators.permutation.AttributePermutator
now gotrng
argument to seed RNG. Please use anint
as a seed specification if you
want random selections/permutations be consistent across searchlights
- Allow for "4D" mri mask volumes with degenerate time dimension (e.g. coming