Created a Dockerfile for Sentieon tools #39

williamrowell · 2023-11-18T01:25:07Z

inspired by https://github.com/Sentieon/sentieon-docker, but uses python:3.9-buster
includes https://github.com/Sentieon/sentieon-scripts
includes PacBio HiFi whole genome model bundle from https://github.com/Sentieon/sentieon-models/, exposed as $MODEL_BUNDLE
all source code is retained in image

sha256:932b6794dd4211368c47d2b09b3e4bca0e35ba7569c5592faccfa70a143beb79

williamrowell added 2 commits November 17, 2023 17:09

initial sentieon dockerfile

47b9f21

switch from curl to wget

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williamrowell self-assigned this Nov 18, 2023

williamrowell marked this pull request as draft November 18, 2023 01:25

export more env vars

3622b2a

Base automatically changed from develop to main December 15, 2023 17:08

Updated base sentieon image to 3.11-bookworm

16f1b20

williamrowell force-pushed the feature/sentieon branch from 2f29a4a to 16f1b20 Compare December 16, 2023 00:40

williamrowell added 2 commits December 15, 2023 16:59

replace gvcf_combine.py

069c2c1

increment build count

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