v1.1.0

What's Changed

• Updated documentation with a logo and a note about the requirement for a container rumtime.
• Updated to HiPhase v1.0.0, which addresses some edge case bugs.

Full Changelog: v1.0.3...v1.1.0

v1.0.3

What's Changed

• Fix for concat_vcf for miniwdl. Link all inputs into a single directory so that vcfs and indices are together. by @williamrowell in #77

Full Changelog: v1.0.2...v1.0.3

v1.0.2

What's Changed

• Replaced WhatsHap with HiPhase for concurrent small variant and large indel phasing and alignment haplotagging.
• Split pbsv call into ~14 equally sized chunks for improved wall time, especially during joint calling.
• Several tools have been updated to newer versions, including TRGT, HiFiCNV, and pb-cpg-tools.
• Additionally output raw bcftools roh output in addition to the simplified bed file.
• Fixed path errors in inputs templates.
• Tertiary analysis is disabled by default, and tertiary analysis inputs are optional.

v0.9.0-beta

Merge pull request #48 from PacificBiosciences/develop