PEtab v0.1.14

• Fix sampling of priors in parameterScale (#492)
• Clarify documentation of parameterScale priors
• Improvements in petab.simulate (#479):
  • Fix default noise distributions
  • Add option for non-negative synthetic data

PEtab v0.1.13

• Fix for pandas 1.2.0 -- use get_handle instead of get_filepath_or_buffer
• Fix erroneous petab_test_suite symlink (all #493)

PEtab v0.1.12

• Documentation update:
  • Added SBML2Julia to list of tools supporting PEtab
  • Extended PEtab introduction
  • Tutorial for creating PEtab files
• Minor fix: Default argument for optional 'model' parameter in
  `petab.lint.check_condition_df`` (#477)

PEtab v0.1.11

• Functions for generating synthetic data (#472)
• Minor documentation updates (#470)

PEtab v0.1.10

Fixed deployment setup, no further changes.

PEtab v0.1.9

Library:

• Allow URL as filenames for YAML files and SBML models (Closes #187) (#459)
• Allow model time in observable formulas (#445)
• Make float parsing from CSV round-trip (#444)
• Validator: Error message for missing IDs, with line numbers. (#467)
• Validator: Detect duplicated observable IDs (#446)
• Some documentation and CI fixes / updates
• Visualization: Add option to save visualization specification (#457)
• Visualization: Column XValue not mandatory anymore (#429)
• Visualization: Add sorting of indices of dataframes for the correct sorting
  of x-values (#430)
• Visualization: Default value for the column x_label in vis_spec (#431)

PEtab v0.1.8

Library:

• Use core.is_empty to check for empty values (#434)
• Move tests to python 3.8 (#435)
• Update to libcombine 0.2.6 (#437)
• Make float parsing from CSV round-trip (#444)
• Lint: Allow model time in observable formulas (#445)
• Lint: Detect duplicated observable ids (#446)
• Fix likelihood calculation with missing values (#451)

Documentation:

• Move format documentation to restructuredtext format (#452)
• Document all noise distributions and observable scales (#452)
• Fix documentation for prior distribution (#449)

Visualization:

• Make XValue column non-mandatory (#429)
• Apply correct condition sorting (#430)
• Apply correct default x label (#431)

PEtab v0.1.7

Documentation:

• Update coverage and links of supporting tools
• Update explanatory figure

PEtab v0.1.6

Library:

• Fix handling of empty columns for residual calculation (#392)
• Allow optional fixing of fixed parameters in parameter mapping (#399)
• Fix function to flatten out time-point specific overrides (#404)
• Add function to create a problem yaml file (#398)
• Allow merging of multiple parameter files (#407)

Documentation:

• In README, add to the overview table the coverage for the supporting tools,
  and links and usage examples (various commits)
• Show REAMDE on readthedocs documentation front page (#400)
• Correct description of observable and noise formulas (#401)
• Update documentation on optional visualization values (#405, #419)

Visualization:

• Fix sorting problem (#396)
• More generously handle optional values (#405, #419)
• Create dataset id also for simulation dataframe (#408)
• Extend test suite for visualization (#418)

PEtab v0.1.5

Release 0.1.5

Library:

• New create empty observable function (issue 386) (#387)
• Deprecate petab.sbml.globalize_parameters (#381)
• Fix computing log10 likelihood (#380)
• Documentation update and typehints for visualization (#372)
• Ordered result of petab.get_output_parameters
• Fix missing argument to parameters.create_parameter_df

Documentation:

• Add overview of supported PEtab feature in toolboxes
• Add contribution guide
• Fix optional values in documentation (#378)