PEtab 2.0 draft #554
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PEtab 2.0 draft #554
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* extract all changes from previous * fixup * allow hyphens in extension names * fixup hyphens * only require one toolbox that implements extension * specify how to work with multiple PEtab problems * specify we do not require a quorum number of votes * allow test cases to be provided by the extension library * Apply suggestions from code review Co-authored-by: Daniel Weindl <dweindl@users.noreply.github.com> Co-authored-by: Daniel Weindl <dweindl@users.noreply.github.com>
PEtab extensions were introduced in #537. We should be able to distinguish there between optional extensions and required extensions, i.e. those that modify the parameter estimation problem as such, and those that just add additional/optional information (e.g. annotations, info for visualization, ...). If some tool does not know about a certain optional extension, it can safely be ignored during import, if it does not know about a required extension, it should fail. This PR adds a `required` attribute to extensions in the yaml file to indicate whether they are required for the mathematical interpretation of the PEtab problem. Resolves #544
Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com>
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Nowhere close to final. Do not merge.