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Update README.md
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sfchen committed Oct 29, 2017
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* For pair-end sequencing data, `After` will do an `overlap analysis`. read1 and read2 will be overlapped when `read1_length + read2_length > DNA_template_length`.

# Cite AfterQC
Shifu Chen, Tanxiao Huang, Yanqing Zhou, Yue Han, Mingyan Xu and Jia Gu. AfterQC: automatic filtering, trimming, error removing and quality control for fastq data. BMC Bioinformatics 2017 18(Suppl 3):80
Shifu Chen, Tanxiao Huang, Yanqing Zhou, Yue Han, Mingyan Xu and Jia Gu. AfterQC: automatic filtering, trimming, error removing and quality control for fastq data. BMC Bioinformatics 2017 18(Suppl 3):80 https://doi.org/10.1186/s12859-017-1469-3

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