Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add sphinx documentation for Python bindings and GitHub action workflow to push to GitHub pages #5243

Open
wants to merge 3 commits into
base: master
Choose a base branch
from
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
53 changes: 53 additions & 0 deletions .github/workflows/python_sphinx_docs.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,53 @@
name: Build Python Sphinx Docs and push to gh-pages

on:
push:
branches: main
paths:
- 'python/**'
- '.github/workflows/python_sphinx_docs.yml'
pull_request:
branches: main
paths:
- 'python/**'
- '.github/workflows/python_sphinx_docs.yml'
permissions:
contents: write
jobs:
build:
runs-on: ubuntu-latest
steps:
- name: checkout source code
uses: actions/checkout@v4
with:
fetch-depth: 0 # Fetch all history for all tags and branches
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: "3.11"
- name: Install poetry
uses: abatilo/actions-poetry@v2
- name: Install python dependencies
run: |
cd python/sphinx_docs
poetry install
- name: Build documentation
run: |
cd python
mkdir gh-pages
touch gh-pages/.nojekyll
cd sphinx_docs
# Currently we build only docs for the HEAD of the master branch
# Later we can add release tags to the list to get the docs for the releases
# For example: -b "main, release/2024.04/final" will build the docs for
# the main branch and the release/2024.04/final tag
poetry run sphinx-versioned -m master -b master --git-root ../../
- name: Copy documentation to gh-pages
run: |
cp -r python/sphinx_docs/docs/_build/* gh-pages/
- name: Deploy documentation
if: ${{ github.event_name == 'push' }}
uses: JamesIves/github-pages-deploy-action@v4
with:
branch: gh-pages
folder: python/gh-pages
9 changes: 8 additions & 1 deletion .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -34,4 +34,11 @@ build/
*.dSYM

# emacs directory setting:
.dir-locals.el
.dir-locals.el

# Python sphinx build
python/sphinx_docs/docs/_build/

# Python cache directories
**/__pycache__/

7 changes: 7 additions & 0 deletions python/sphinx_docs/Makefile
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
.PHONY: docs

# Build the documentation locally for the current branch
# NOTE: You need to commit your changes before running this command
docs:
@CURRENT_BRANCH=$(shell git rev-parse --abbrev-ref HEAD)
sphinx-versioned -m $$CURRENT_BRANCH -b $$CURRENT_BRANCH --git-root ../../
23 changes: 23 additions & 0 deletions python/sphinx_docs/README.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
# Python scripts for building opm-simulators sphinx documentation

## Installation of the python scripts
- Requires python3 >= 3.10

### Using poetry
For development it is recommended to use poetry:

- Install [poetry](https://python-poetry.org/docs/)
- Then run:
```
$ poetry install
$ poetry shell
```

### Installation into virtual environment
If you do not plan to change the code, you can do a regular installation into a VENV:

```
$ python -m venv .venv
$ source .venv/bin/activate
$ pip install .
```
55 changes: 55 additions & 0 deletions python/sphinx_docs/docs/conf.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,55 @@
# Configuration file for the Sphinx documentation builder.

project = "opm.simulators"
copyright = "2024 Equinor ASA"
author = "Håkon Hægland"

# Function to extract release version from dune.module file
def extract_opm_simulators_release():
version_file_path = '../../../dune.module'
with open(version_file_path, 'r') as file:
for line in file:
if line.startswith('Version:'):
version_string = line.split(':')[1].strip()
return version_string
return "unknown" # Fallback version

release = extract_opm_simulators_release()

# -- General configuration ---------------------------------------------------
import os
import sys

# For regular Python packages, the path to the package is usually added to sys.path
# here such that autodoc can find the modules. However, our Python module
# opm.simulators.BlackOilSimulator is not generated yet. Since it is a pybind11
# extension module, it needs to be compiled as part of the opm-simulators build
# process (which requires building opm-common first and so on). The full compilation
# of opm-simulators requres time and storage resources, so we do not want to
# do this as part of the documentation build. Instead, we will use a sphinx extension
# (Python script) to generate documentation from a JSON input file. (This JSON file
# is also is also used to generate a C++ header file with docstrings. The header file
# is generated when opm-simulators is built and is then included
# in the pybind11 binding code for the BlackOilSimulator class. In this way, the
# opm.simulators.BlackOilSimulator Python module will also have access to the docstrings.)
sys.path.insert(0, os.path.abspath("../src"))
# Our sphinx extension that will use the docstrings.json file to generate documentation
extensions = ["opm_simulators_docs.sphinx_ext_docstrings"]
# Path to docstrings.json
opm_simulators_docstrings_path = os.path.abspath('../../docstrings.json')

templates_path = ["_templates"]
exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]


# -- Options for HTML output -------------------------------------------------
# See: https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output
html_theme = "sphinx_rtd_theme"
html_static_path = ["_static"]
html_context = {
"display_github": True,
"github_user": "OPM",
"github_repo": "opm-simulators",
"github_version": "master",
"conf_py_path": "/python/docs/",
}
16 changes: 16 additions & 0 deletions python/sphinx_docs/docs/index.rst
Original file line number Diff line number Diff line change
@@ -0,0 +1,16 @@
Welcome to the Python documentation for opm-simulators!
=======================================================

.. toctree::
:maxdepth: 1
:caption: Contents:

introduction
python

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`
4 changes: 4 additions & 0 deletions python/sphinx_docs/docs/introduction.rst
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
Introduction
============

Documentation for the ``opm.simulators`` Python module.
4 changes: 4 additions & 0 deletions python/sphinx_docs/docs/python.rst
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
Python Module Documentation
===========================

.. opm_simulators_docstrings::