fix header in permeability.csv #99
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| name: LBPM CI | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build-and-test: | |
| runs-on: ubuntu-latest | |
| env: | |
| LBPM_ZLIB_DIR: /home/runner/extlib/zlib | |
| LBPM_HDF5_DIR: /home/runner/extlib/hdf5 | |
| LBPM_SILO_DIR: /home/runner/extlib/silo | |
| MPI_DIR: /home/runner/.openmpi | |
| steps: | |
| - name: download dependencies | |
| run: | | |
| echo $LBPM_ZLIB_DIR | |
| echo $LBPM_HDF5_DIR | |
| echo $LBPM_SILO_DIR | |
| echo $GITHUB_PATH | |
| echo $GITHUB_WORKSPACE | |
| sudo apt-get update -y | |
| wget https://bitbucket.org/AdvancedMultiPhysics/tpl-builder/downloads/silo-4.10.2.tar.gz | |
| wget https://www.zlib.net/fossils/zlib-1.2.11.tar.gz | |
| wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.12/src/hdf5-1.8.12.tar.gz | |
| #wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.10/src/hdf5-1.8.10.tar.gz | |
| tar -xzvf zlib-1.2.11.tar.gz | |
| tar -xzvf hdf5-1.8.12.tar.gz | |
| tar -xzvf silo-4.10.2.tar.gz | |
| - name: check out commit | |
| uses: actions/checkout@v2 | |
| with: | |
| path: LBPM | |
| - name: install-openmpi | |
| run: | | |
| wget https://download.open-mpi.org/release/open-mpi/v3.1/openmpi-3.1.2.tar.gz | |
| tar -xvf ./openmpi-3.1.2.tar.gz | |
| ./openmpi-3.1.2/configure --prefix="$HOME/.openmpi" | |
| make -j | |
| sudo make install | |
| echo "$HOME/.openmpi/bin" >> $GITHUB_PATH | |
| - name: install zlib dependencies | |
| run: | | |
| cd zlib-1.2.11 | |
| ./configure --prefix=$LBPM_ZLIB_DIR | |
| make | |
| sudo make install | |
| cd .. | |
| - name: install hdf5 dependencies | |
| run: | | |
| cd hdf5-1.8.12 | |
| CC=/home/runner/.openmpi/bin/mpicc CXX=/home/runner/.openmpi/bin/mpicxx CXXFLAGS="-fPIC -O3 -std=c++14" \ | |
| ./configure --prefix=$LBPM_HDF5_DIR --enable-parallel --enable-shared --with-zlib=$LBPM_ZLIB_DIR | |
| make | |
| sudo make install | |
| cd .. | |
| - name: install silo dependencies | |
| run: | | |
| cd silo-4.10.2 | |
| CC=$MPI_DIR/bin/mpicc CXX=$MPI_DIR/bin/mpicxx CXXFLAGS="-fPIC -O3 -std=c++14" \ | |
| ./configure --prefix=$LBPM_SILO_DIR -with-hdf5="$LBPM_HDF5_DIR/include,$LBPM_HDF5_DIR/lib" --enable-static | |
| make | |
| sudo make install | |
| cd .. | |
| - name: configure cmake | |
| run: | | |
| mkdir build | |
| cd build | |
| rm -rf CMake* | |
| cmake \ | |
| -D CMAKE_BUILD_TYPE:STRING=Release \ | |
| -D CMAKE_C_COMPILER:PATH=$MPI_DIR/bin/mpicc \ | |
| -D CMAKE_CXX_COMPILER:PATH=$MPI_DIR/bin/mpicxx \ | |
| -D MPI_CXX_COMPILER=$MPI_DIR/bin/mpicxx \ | |
| -D CMAKE_C_FLAGS="-fPIC" \ | |
| -D CMAKE_CXX_FLAGS="-fPIC" \ | |
| -D CMAKE_CXX_STD=14 \ | |
| -D TEST_MAX_PROCS=1 \ | |
| -D USE_TIMER=0 \ | |
| -D TIMER_DIRECTORY=$LBPM_TIMER_DIR \ | |
| -D USE_NETCDF=0 \ | |
| -D NETCDF_DIRECTORY=$LBPM_NETCDF_DIR \ | |
| -D USE_SILO=0 \ | |
| -D HDF5_DIRECTORY=$LBPM_HDF5_DIR \ | |
| -D SILO_DIRECTORY=$LBPM_SILO_DIR \ | |
| -D USE_CUDA=0 \ | |
| $GITHUB_WORKSPACE/LBPM | |
| - name: build and make | |
| run: | | |
| cd build | |
| make | |
| sudo make install | |
| cd .. | |
| - name: tests | |
| run: | | |
| cd build | |
| ctest |