re-add gene expression routes and views. #806
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…ve container time to spin up.
…timasker in image reduction for ahba calls
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upgrading to nibabel 5.1 causes issues with nidmresults and nidmresults-fsl. Looking into patching these. |
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Dropping down to nibabel 4 gets all but one of the tests to pass. Issues are around nidmresults which need to be fixed on their own anyways. |
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I believe these were removed originally because we couldn't get the ahba docker image to build. I was able to get the preparing_AHBA_data.py script to run, but the df.drop removing coordinates outside of the brain caused key errors. changing the drop to use errors='ignore' allowed script to run to completion and produced a store_max1_reduced.h5 that was about the same size as the old one, but according to h5diff contained many differences. Opting to use old version of it.