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ClaraGenomicsAnalysis 0.5.0 - Release Candidate 1

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@tijyojwad tijyojwad released this 04 Mar 21:46
· 1076 commits to dev-v0.5.0 since this release
v0.5.0-rc1
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Release candidate for v0.5.0 focuses primarily on improving the performance of the GPU accelerated mapper, cudamapper . Here are some highlights of this release so far -

  1. CUDA Mapper
  • Enabled filtering of high frequency sketch elements in index (-F option. More details highlighted in help message)
  • Host and device caching for improved indexer performance (-C and -c)
  • Smart cached memory allocator for improved device memory initialization time
  • Re-architected matcher/overlapper components to improve end to end performance
  • Algorithmic improvements to overlapper leader to higher accuracy of overlaps
Application dataset GPU v0.4.3 v0.5.0-rc1 Acceleration
cudamapper all-vs-all ONT E. Coli 150x 1x GV100 32GB 72.3s 23.2s 3.11x
Assets 2