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GSE40705.html
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GSE40705.html
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<!DOCTYPE html>
<html>
<head>
<meta charset="UTF-8" />
<title>GSE40705, Pancreas | Genome-Wide RNA-Seq Viewer</title>
<link type="text/css" rel="stylesheet" href="ideogram/src/css/ideogram.css"/>
<link type="text/css" rel="stylesheet" href="css/rnaseqview.css"/>
<script type="text/javascript" src="ideogram/src/js/d3.min.js"></script>
<script type="text/javascript" src="ideogram/src/js/ideogram.js"></script>
<script type="text/javascript" src="ideogram/src/js/crossfilter.min.js"></script>
<script type="text/javascript" src="ideogram/src/js/ideogram.filter.js"></script>
</head>
<body>
<h1>GSE40705, Pancreas | Genome-Wide RNA-Seq Viewer</h1>
<div id="container"></div>
<ul id="expression-level">
Expression level
<li>
<label for="filter_expression-level_extremely-high">
<input type="checkbox" id="filter_expression-level_extremely-high">Extremely high</input>
<span class="count"></span>
</label>
</li>
<li>
<label for="filter_expression-level_very-high">
<input type="checkbox" id="filter_expression-level_very-high">Very high</input>
<span class="count"></span>
</label>
</li>
<li>
<label for="filter_expression-level_high">
<input type="checkbox" id="filter_expression-level_high">High</input>
<span class="count"></span>
</label>
</li>
<li>
<label for="filter_expression-level_moderately-high">
<input type="checkbox" id="filter_expression-level_moderately-high">Moderately high</input>
<span class="count"></span>
</label>
</li>
<li>
<label for="filter_expression-level_moderate">
<input type="checkbox" id="filter_expression-level_moderate">Moderate</input>
<span class="count"></span>
</label>
</li>
<li>
<label for="filter_expression-level_low">
<input type="checkbox" id="filter_expression-level_low">Low</input>
<span class="count"></span>
</label>
</li>
<li>
<label for="filter_expression-level_very-low">
<input type="checkbox" id="filter_expression-level_very-low">Very low</input>
<span class="count"></span>
</label>
</li>
</ul>
<ul id="gene-type">
Gene type
<li>
<label for="filter_gene-type_mrna">
<input type="checkbox" id="filter_gene-type_mrna">mRNA</input>
<span class="count"></span>
</label>
</li>
<li>
<label for="filter_gene-type_ncrna">
<input type="checkbox" id="filter_gene-type_ncrna">ncRNA</input>
<span class="count"></span>
</label>
</li>
<li>
<label for="filter_gene-type_misc-rna">
<input type="checkbox" id="filter_gene-type_misc-rna">misc_RNA</input>
<span class="count"></span>
</label>
</li>
<li>
<label for="filter_gene-type_precursor-rna">
<input type="checkbox" id="filter_gene-type_precursor-rna">precursor_RNA</input>
<span class="count"></span>
</label>
</li>
<li>
<label for="filter_gene-type_trna">
<input type="checkbox" id="filter_gene-type_trna">tRNA</input>
<span class="count"></span>
</label>
</li>
<li>
<label for="filter_gene-type_other">
<input type="checkbox" id="filter_gene-type_other">other</input>
<span class="count"></span>
</label>
</li>
</ul>
<div class="note">Source data: <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE40705" target="_blank">https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE40705</a></div>
<script type="text/javascript">
var counts, key, count;
function onIdeogramLoad() {
d3.selectAll("g.chromosome").on("click", function() {
ideogram.rotateAndToggleDisplay(this.id);
});
}
d3.selectAll("input").on("click", function() {
var filterMap,
tmp, facet,
checkedFilter,
checkedFilters,
selections = {},
i, facet, counts, count,
filterID;
filterMap = {
"expression-level": {
"extremely-high": 7,
"very-high": 6,
"high": 5,
"moderately-high": 4,
"moderate": 3,
"low": 2,
"very-low": 1
},
"gene-type": {
"mrna": 1,
"ncrna": 2,
"misc-rna": 3,
"precursor-rna": 4,
"trna": 5,
"rrna": 6,
"other": 7
}
};
checkedFilters = d3.selectAll("input:checked")[0];
for (i = 0; i < checkedFilters.length; i++) {
tmp = checkedFilters[i].id.split("_");
facet = tmp[1];
checkedFilter = tmp[2];
filterID = filterMap[facet][checkedFilter];
if (facet in selections == false) {
selections[facet] = {};
}
selections[facet][filterID] = 1;
}
ideogram.filterAnnots(selections);
});
var config = {
container: "#container",
taxid: 9606,
chromosomes: ["1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "X", "Y"],
chrWidth: 10,
chrHeight: 300,
chrMargin: 10,
showChromosomeLabels: true,
annotationsPath: "data/GSE40705.json",
annotationsLayout: "histogram",
histogramScaling: "relative",
barWidth: 3,
orientation: "vertical",
bandDir: "ideogram/data/bands/",
onLoad: onIdeogramLoad
};
var ideogram = new Ideogram(config);
</script>
</body>
</html>