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@Mye-InfoBank

Mye-InfoBank

COST Action CA20117 - Mye-InfoBank is dedicated to converting molecular profiles of myeloid cells into biomarkers for inflammation and cancer.

Popular repositories

  1. SIMBA SIMBA Public

    A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.

    Nextflow 7

  2. scib scib Public

    Forked from theislab/scib

    Benchmarking analysis of data integration tools

    Python

  3. cellxgene_VIP cellxgene_VIP Public

    Forked from interactivereport/cellxgene_VIP

    Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It alsoā€¦

    HTML

  4. cellxgene cellxgene Public

    Forked from chanzuckerberg/cellxgene

    An interactive explorer for single-cell transcriptomics data

    JavaScript

  5. SIMBA-QC SIMBA-QC Public

    This repository contains the source code of the python shiny app which is recommended to be used for the quality control of the SIMBAšŸ¦ pipeline.

    Python

  6. SIMBA-Downstream SIMBA-Downstream Public

    This repository contains the source code of the python shiny app which is recommended to be used for the downstream analysis of the output of the SIMBAšŸ¦ pipeline.

    Python

Repositories

Showing 7 of 7 repositories
  • SIMBA-Downstream Public

    This repository contains the source code of the python shiny app which is recommended to be used for the downstream analysis of the output of the SIMBAšŸ¦ pipeline.

    Python 0 0 2 0 Updated May 22, 2024
  • SIMBA-QC Public

    This repository contains the source code of the python shiny app which is recommended to be used for the quality control of the SIMBAšŸ¦ pipeline.

    Python 0 BSD-3-Clause 0 0 0 Updated May 11, 2024
  • SIMBA Public

    A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.

    Nextflow 7 BSD-3-Clause 0 5 0 Updated May 3, 2024
  • scHPL Public Forked from lcmmichielsen/scHPL
    Jupyter Notebook 0 MIT 2 0 0 Updated Apr 17, 2024
  • scib Public Forked from theislab/scib

    Benchmarking analysis of data integration tools

    Python 0 MIT 60 0 0 Updated Apr 9, 2024
  • cellxgene Public Forked from chanzuckerberg/cellxgene

    An interactive explorer for single-cell transcriptomics data

    JavaScript 0 MIT 111 0 0 Updated Mar 13, 2024
  • cellxgene_VIP Public Forked from interactivereport/cellxgene_VIP

    Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

    HTML 0 MIT 43 0 0 Updated Feb 24, 2024

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