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diff --git a/.buildinfo b/.buildinfo
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+# Sphinx build info version 1
+# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
+config: 7ad60764a6863f28086f2b317bb1d13a
+tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/.nojekyll b/.nojekyll
diff --git a/_images/analysis-rel.png b/_images/analysis-rel.png
diff --git a/_images/analysis-seq.png b/_images/analysis-seq.png
diff --git a/_images/gui_clustering.png b/_images/gui_clustering.png
diff --git a/_images/gui_input.png b/_images/gui_input.png
diff --git a/_images/gui_results.png b/_images/gui_results.png
diff --git a/_images/line-desc.png b/_images/line-desc.png
diff --git a/_images/treesearch-rel.png b/_images/treesearch-rel.png
diff --git a/_images/treesearch-seq.png b/_images/treesearch-seq.png
diff --git a/_sources/aizynthfinder.analysis.rst.txt b/_sources/aizynthfinder.analysis.rst.txt
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+aizynthfinder.analysis package
+==============================
+
+Submodules
+----------
+
+aizynthfinder.analysis.routes module
+------------------------------------
+
+.. automodule:: aizynthfinder.analysis.routes
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+aizynthfinder.analysis.tree\_analysis module
+--------------------------------------------
+
+.. automodule:: aizynthfinder.analysis.tree_analysis
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+aizynthfinder.analysis.utils module
+-----------------------------------
+
+.. automodule:: aizynthfinder.analysis.utils
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Module contents
+---------------
+
+.. automodule:: aizynthfinder.analysis
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/aizynthfinder.chem.rst.txt b/_sources/aizynthfinder.chem.rst.txt
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+aizynthfinder.chem package
+==========================
+
+Submodules
+----------
+
+aizynthfinder.chem.mol module
+-----------------------------
+
+.. automodule:: aizynthfinder.chem.mol
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+aizynthfinder.chem.reaction module
+----------------------------------
+
+.. automodule:: aizynthfinder.chem.reaction
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+aizynthfinder.chem.serialization module
+---------------------------------------
+
+.. automodule:: aizynthfinder.chem.serialization
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Module contents
+---------------
+
+.. automodule:: aizynthfinder.chem
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/aizynthfinder.context.policy.rst.txt b/_sources/aizynthfinder.context.policy.rst.txt
@@ -0,0 +1,45 @@
+aizynthfinder.context.policy package
+====================================
+
+Submodules
+----------
+
+aizynthfinder.context.policy.expansion\_strategies module
+---------------------------------------------------------
+
+.. automodule:: aizynthfinder.context.policy.expansion_strategies
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+aizynthfinder.context.policy.filter\_strategies module
+------------------------------------------------------
+
+.. automodule:: aizynthfinder.context.policy.filter_strategies
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+aizynthfinder.context.policy.policies module
+--------------------------------------------
+
+.. automodule:: aizynthfinder.context.policy.policies
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+aizynthfinder.context.policy.utils module
+-----------------------------------------
+
+.. automodule:: aizynthfinder.context.policy.utils
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Module contents
+---------------
+
+.. automodule:: aizynthfinder.context.policy
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/aizynthfinder.context.rst.txt b/_sources/aizynthfinder.context.rst.txt
@@ -0,0 +1,39 @@
+aizynthfinder.context package
+=============================
+
+Subpackages
+-----------
+
+.. toctree::
+   :maxdepth: 4
+
+   aizynthfinder.context.policy
+   aizynthfinder.context.scoring
+   aizynthfinder.context.stock
+
+Submodules
+----------
+
+aizynthfinder.context.collection module
+---------------------------------------
+
+.. automodule:: aizynthfinder.context.collection
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+aizynthfinder.context.config module
+-----------------------------------
+
+.. automodule:: aizynthfinder.context.config
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Module contents
+---------------
+
+.. automodule:: aizynthfinder.context
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/aizynthfinder.context.scoring.rst.txt b/_sources/aizynthfinder.context.scoring.rst.txt
@@ -0,0 +1,29 @@
+aizynthfinder.context.scoring package
+=====================================
+
+Submodules
+----------
+
+aizynthfinder.context.scoring.collection module
+-----------------------------------------------
+
+.. automodule:: aizynthfinder.context.scoring.collection
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+aizynthfinder.context.scoring.scorers module
+--------------------------------------------
+
+.. automodule:: aizynthfinder.context.scoring.scorers
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Module contents
+---------------
+
+.. automodule:: aizynthfinder.context.scoring
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/aizynthfinder.context.stock.rst.txt b/_sources/aizynthfinder.context.stock.rst.txt
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+aizynthfinder.context.stock package
+===================================
+
+Submodules
+----------
+
+aizynthfinder.context.stock.queries module
+------------------------------------------
+
+.. automodule:: aizynthfinder.context.stock.queries
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+aizynthfinder.context.stock.stock module
+----------------------------------------
+
+.. automodule:: aizynthfinder.context.stock.stock
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Module contents
+---------------
+
+.. automodule:: aizynthfinder.context.stock
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/aizynthfinder.interfaces.gui.rst.txt b/_sources/aizynthfinder.interfaces.gui.rst.txt
@@ -0,0 +1,21 @@
+aizynthfinder.interfaces.gui package
+====================================
+
+Submodules
+----------
+
+aizynthfinder.interfaces.gui.clustering module
+----------------------------------------------
+
+.. automodule:: aizynthfinder.interfaces.gui.clustering
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Module contents
+---------------
+
+.. automodule:: aizynthfinder.interfaces.gui
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/aizynthfinder.interfaces.rst.txt b/_sources/aizynthfinder.interfaces.rst.txt
@@ -0,0 +1,37 @@
+aizynthfinder.interfaces package
+================================
+
+Subpackages
+-----------
+
+.. toctree::
+   :maxdepth: 4
+
+   aizynthfinder.interfaces.gui
+
+Submodules
+----------
+
+aizynthfinder.interfaces.aizynthapp module
+------------------------------------------
+
+.. automodule:: aizynthfinder.interfaces.aizynthapp
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+aizynthfinder.interfaces.aizynthcli module
+------------------------------------------
+
+.. automodule:: aizynthfinder.interfaces.aizynthcli
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Module contents
+---------------
+
+.. automodule:: aizynthfinder.interfaces
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/aizynthfinder.rst.txt b/_sources/aizynthfinder.rst.txt
@@ -0,0 +1,43 @@
+aizynthfinder package
+=====================
+
+Subpackages
+-----------
+
+.. toctree::
+   :maxdepth: 4
+
+   aizynthfinder.analysis
+   aizynthfinder.chem
+   aizynthfinder.context
+   aizynthfinder.interfaces
+   aizynthfinder.search
+   aizynthfinder.tools
+   aizynthfinder.utils
+
+Submodules
+----------
+
+aizynthfinder.aizynthfinder module
+----------------------------------
+
+.. automodule:: aizynthfinder.aizynthfinder
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+aizynthfinder.reactiontree module
+---------------------------------
+
+.. automodule:: aizynthfinder.reactiontree
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Module contents
+---------------
+
+.. automodule:: aizynthfinder
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/aizynthfinder.search.breadth_first.rst.txt b/_sources/aizynthfinder.search.breadth_first.rst.txt
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+aizynthfinder.search.breadth\_first package
+===========================================
+
+Submodules
+----------
+
+aizynthfinder.search.breadth\_first.nodes module
+------------------------------------------------
+
+.. automodule:: aizynthfinder.search.breadth_first.nodes
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+aizynthfinder.search.breadth\_first.search\_tree module
+-------------------------------------------------------
+
+.. automodule:: aizynthfinder.search.breadth_first.search_tree
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Module contents
+---------------
+
+.. automodule:: aizynthfinder.search.breadth_first
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/aizynthfinder.search.dfpn.rst.txt b/_sources/aizynthfinder.search.dfpn.rst.txt
@@ -0,0 +1,29 @@
+aizynthfinder.search.dfpn package
+=================================
+
+Submodules
+----------
+
+aizynthfinder.search.dfpn.nodes module
+--------------------------------------
+
+.. automodule:: aizynthfinder.search.dfpn.nodes
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+aizynthfinder.search.dfpn.search\_tree module
+---------------------------------------------
+
+.. automodule:: aizynthfinder.search.dfpn.search_tree
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Module contents
+---------------
+
+.. automodule:: aizynthfinder.search.dfpn
+   :members:
+   :undoc-members:
+   :show-inheritance: