This repository contains a workflow for inference of transcriptional regulatory networks (TRNs) from gene expression data and prior information, as described in:
Miraldi et al., Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells.
The main workflow is found here:
workflow.jl
This workflow can benefit from parallelization, with significant speedups from using multiple cores. The workflow can be run on the BMI cluster with n cores using the bat file:
workflow.bat \
