This repository has been archived. Please refer to the MicrobioSee2. https://github.com/jinhuili-lab/MicrobioSee2
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- This is a tool for plotting.
- Please see： https://microbiosee.github.io/
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The web-based visualization toolkit developed in this study can be used on all operating system platforms that support modern browsers, and MicrobioSee provides data mining and visualization services for the field of microbial integration research.
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MicrobioSee is a complementary toolkit for multi-omics data, and is available free of charge from https://microbiosee.gxu.edu.cn;
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Detailed user documentation can be found at https://microbiosee.github.io,
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The main code is available at https://github.com/MicrobioSee/MicrobioSee.
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In this work, we developed MicrobioSee, a web-based real-time interactive visualization tool based on web technologies, which could visualize microbial multi-omics data and include seventeen modules surrounding the major omics of microorganisms such as transcriptome, metagenome, and proteome. Subsequently, three case studies were chosen to represent the functional application of MicrobioSee. Overall, we provide a concise tool along with user-friendly, time-saving, cross-platform, and source-opening for researchers especially microbiologists without coding experience.
Cite:
Jinhui Li, Yimeng Sang, Sen Zeng, Shuming Mo, Zufan Zhang, Sheng He, Xinying Li, Guijiao Su, Jianping Liao*, and Chengjian Jiang*. MicrobioSee: a web-based visualization toolkit for multi-omics of microbiology. Frontiers in Genetics. 2022. 13: 853612. DOI: 10.3389/fgene.2022.853612.
Author: Chengjian Jiang, Jinhui Li, Yimeng Sang, Sen Zeng
Writed at 2021.10.30
Email: jiangcj@gxu.edu.cn
State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources,
Guangxi Research Center for Microbial and Enzyme Engineering Technology,
College of Life Science and Technology,
Guangxi University,
Nanning 530004, China
Life is so short, to do something that one wants, and if can be useful to others, then the life is full. -----Jinhui Li
Orcid: Jinhui Li
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