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@MatreyekLab

Matreyek Lab

GitHub page for the Matreyek Lab at Case Western Reserve University

Popular repositories

  1. Pymol_spinning_images Pymol_spinning_images Public

    This python script exports a text file of commands for making the view spin 360 degrees around your protein, and exporting 360 ray-traced PNG images of each view.

    Python 1

  2. ACE2_variants ACE2_variants Public

    R 1

  3. Glycine_Serine_random_linker_nucleotides Glycine_Serine_random_linker_nucleotides Public

    This script will ask you how long of a flexible amino-acid linker you want, and give you back a random assortment of glycine and serine codons to the length of your desire.

    Jupyter Notebook

  4. Primer_Inventory_Google_Sheet_to_Benchling Primer_Inventory_Google_Sheet_to_Benchling Public

    Python

  5. Plasmid_Locator Plasmid_Locator Public

    This script takes in a text file as a list of plasmids and outputs a csv file providing information regarding their locations in the lab and other notes that are helpful for preparing cloning react…

    Python

  6. Recombinastics Recombinastics Public

    Using a second recombination site to improve landing pad utility

    Python

Repositories

Showing 10 of 21 repositories
  • SARS2-CoV-2_ACE2_variant_combinations Public
    HTML 0 MIT 0 0 0 Updated Feb 9, 2024
  • Recombinastics Public

    Using a second recombination site to improve landing pad utility

    Python 0 0 0 0 Updated Sep 23, 2023
  • Sequence_design_and_analysis Public

    This respiratory contains all python codes created to design DNA sequences on benchling and other sequence analysis

    Python 0 2 0 0 Updated Aug 30, 2023
  • ACE2_dependence Public
    HTML 0 0 0 0 Updated Jul 6, 2022
  • CWRU_Flow_Cytometry Public

    Optimizing the best laser and filter combinations for each fluorescent protein for each flow cytometer

    0 0 0 0 Updated May 9, 2022
  • Analysis-for-Nidhi Public

    This repo contains all scripts that perform some quick analysis and visualizing that assists for Nidhi's experiments

    Jupyter Notebook 0 0 0 0 Updated Jan 28, 2022
  • PTEN_composite Public

    PTEN fill-in abundance DMS and integration with yeast activity scores

    Python 0 0 0 0 Updated Sep 19, 2021
  • Illumina_Amplicon_Analysis Public

    This python script classify which amino acids are present at a certain position from a list of positions

    Jupyter Notebook 0 0 0 0 Updated Sep 14, 2021
  • Analysis-for-Collaborator-Lab Public

    This python script analyzes and characterizes the PALB2 gene library which consists of 300,000 variants. The script creates a csv file that contains the information regarding the attB, barcode, twist barcode, and amino acid mutation of all the PALB2 variants.

    Python 0 0 0 0 Updated Aug 10, 2021
  • Simulating_library_sampling Public

    Simulating sampling from a library, such as during the recombination step with the landing pad cells

    0 0 0 0 Updated Aug 9, 2021
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