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27 Open 202 Closed
27 Open 202 Closed
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Issues list

object 'as.SimpleList' of mode 'function' was not found when running calcNhoodDistance
#332 opened May 22, 2024 by shuaizh117
2
Progress Bar for GLMM
#331 opened May 22, 2024 by DarioS
1
Function Not Found Error bug Something isn't working
#328 opened May 20, 2024 by DarioS
3
Cell type is lost during annotateNhoods
#327 opened May 16, 2024 by carlacohen
3
Cell Condition Relabelling Functionality
#325 opened May 14, 2024 by DarioS
Error in scale_color_gradient2()
#321 opened May 6, 2024 by ShashTrip1
1
Predefined Graph Import Still Not Available to Use documentation Improvements or additions to documentation
#318 opened Apr 10, 2024 by DarioS
4
Design matrix and nhood counts are not the same dimension
#317 opened Apr 5, 2024 by nbutyrate
1
Error: (converted from warning) 'as(<dgTMatrix>, "dgCMatrix")' is deprecated.
#314 opened Mar 15, 2024 by Lil-5
4
Results Changed
#313 opened Mar 13, 2024 by ShashTrip1
2
Reorder Ident in plotDAbeeswarm
#311 opened Mar 9, 2024 by ShashTrip1
4
plotNhoodGraphDA does not display logFC data
#309 opened Feb 29, 2024 by tnystul
2
error in makeNhoods
#307 opened Feb 15, 2024 by GrigoriiNos
3
How to implement more complex contrast formulas
#305 opened Feb 2, 2024 by CarlottaHS
3
Update contrasts documentation documentation Improvements or additions to documentation
#304 opened Jan 17, 2024 by MikeDMorgan
@MikeDMorgan
scVI corrected dimensions with MiloR
#300 opened Jan 5, 2024 by LinearParadox
1
Choice of fdr.weighting in testNhoods
#299 opened Dec 22, 2023 by bazelep
2
Can I run calcNhoodDistance before countCells
#293 opened Nov 2, 2023 by yulijia
3
Problem in buildNhoodGraph on a large dataset
#290 opened Sep 1, 2023 by moinfar
5
merging Nhood with logFC of opposite sign bug Something isn't working
#270 opened Mar 3, 2023 by gianfilippo
@MikeDMorgan
15
support for time points from same donor
#268 opened Feb 24, 2023 by zia1138
11
Overlay DA neighborhoods on embedding
#251 opened Nov 16, 2022 by mdmanurung
Annotating nhoods by continuous covariates
#218 opened May 10, 2022 by emdann
1
[Minor] uniform parameter name for name of reducedDim slot
#106 opened Jan 27, 2021 by emdann
Overplotting in nhood graphs enhancement New feature or request
#67 opened Oct 29, 2020 by MikeDMorgan
6
ProTip! Adding no:label will show everything without a label.