eDNA Project

This repository contains open-source code, data, & text files for the extracellular Bacterial DNA project (eDNA) Study to determine how extracellular DNA influences microbial community structure

Project Goals

• Aim 1)

• Aim 2)

• Aim 3)

Repo Contents

• code:

  • abundance.Rmd - RMarkdown file for
  • diversity.Rmd

• data:

  • eDNA.prop.txt - qPCR data
  • eDNA_Design.txt - Experimental design and other meta data for eDNA project
  • even.txt - Alpha diversity output from eDNA microbial communities
  • rich.txt - Alpha diversity output from eDNA microbial communities

• bin:

  • DiversityFunctions.R - Source code for microbial community analysis functions. Written by Mario Muscarella (2014/09/04)
  • MothurTools.R - Source code for functions related to using mothur output in R. Written by Mario Muscarella (2015/02/22)

• figures: *

• mothur: *

Contributors

Dr. Jay Lennon: Principle Investigator, Associate Professor, Department of Biology, Indiana University, Bloomington. Head of the Lennon Lab.

Mario Muscarella: Ph.D. candidate in the Lennon Lab